C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane channel-like gene family 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038743 Tmc4-001 ENSMUSG00000019734 10090 - 7:3665790-3677510 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonKidneyLiverLungOvaryPlacentaENSMUST00000038743
Transcript ID Adipose Bladder Breast Colon Kidney Liver Lung Ovary Placenta
ENSMUST00000038743 17.212±0.25 46.617±8.54 13.389±1.26 115.524±9.51 14.552±5.89 4.247±0.01 27.141±2.23 15.091±1.64 24.453±4.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U4 CIL_0001U4_0002 CGP 7:3645290-3665840
CIL_0001GV CIL_0001GV_0002 CGP 7:3660098-3677524
CIL_0001JN CIL_0001JN_0002 CGP 7:3665790-3693523

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000446291 TMC4-002 protein_coding Homo_sapiens 0 396
ENST00000476013 TMC4-004 processed_transcript Homo_sapiens 0 342
ENST00000610383 TMC4-002 protein_coding Homo_sapiens 0 396
ENST00000610766 TMC4-005 processed_transcript Homo_sapiens 0 390
ENST00000611183 TMC4-009 retained_intron Homo_sapiens 1e-34 150
ENST00000611201 TMC4-009 retained_intron Homo_sapiens 4e-33 145
ENST00000612109 TMC4-009 retained_intron Homo_sapiens 4e-33 145
ENST00000612564 TMC4-001 protein_coding Homo_sapiens 0 1509
ENST00000612712 TMC4-202 protein_coding Homo_sapiens 0 1509
ENST00000613354 TMC4-205 protein_coding Homo_sapiens 0 1509
ENST00000613723 TMC4-010 retained_intron Homo_sapiens 0 752
ENST00000615807 TMC4-009 retained_intron Homo_sapiens 9e-35 150
ENST00000615945 TMC4-007 nonsense_mediated_decay Homo_sapiens 1e-34 150
ENST00000616162 TMC4-010 retained_intron Homo_sapiens 0 747
ENST00000616323 TMC4-201 protein_coding Homo_sapiens 0 1509
ENST00000616797 TMC4-003 processed_transcript Homo_sapiens 0 758
ENST00000616977 TMC4-001 protein_coding Homo_sapiens 0 1520
ENST00000617430 TMC4-004 processed_transcript Homo_sapiens 0 342
ENST00000617472 TMC4-011 protein_coding Homo_sapiens 0 1515
ENST00000618362 TMC4-005 processed_transcript Homo_sapiens 0 390
ENST00000618950 TMC4-011 protein_coding Homo_sapiens 0 1509
ENST00000619470 TMC4-203 protein_coding Homo_sapiens 0 1509
ENST00000619510 TMC4-007 nonsense_mediated_decay Homo_sapiens 5e-33 145
ENST00000619895 TMC4-001 protein_coding Homo_sapiens 0 1520
ENST00000620038 TMC4-003 retained_intron Homo_sapiens 0 747
ENST00000620380 TMC4-008 retained_intron Homo_sapiens 5e-33 145
ENST00000620520 TMC4-206 protein_coding Homo_sapiens 0 1509
ENST00000621539 TMC4-002 protein_coding Homo_sapiens 0 1504
ENST00000621593 TMC4-008 retained_intron Homo_sapiens 1e-34 150
ENST00000621671 TMC4-001 protein_coding Homo_sapiens 0 1515
ENST00000621826 TMC4-002 protein_coding Homo_sapiens 0 1515
ENST00000622368 TMC4-204 protein_coding Homo_sapiens 0 1509

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