C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane channel-like gene family 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000019734 Tmc4 10090 - 7:3665790-3677524 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000038743 Tmc4-001 3665790-3677510 protein_coding
  ENSMUST00000121743 Tmc4-002 3665791-3676793 protein_coding
  ENSMUST00000130689 Tmc4-005 3675159-3677484 retained_intron
  ENSMUST00000136678 Tmc4-006 3667442-3670482 retained_intron
  ENSMUST00000144751 Tmc4-003 3670691-3677524 retained_intron
  ENSMUST00000145034 Tmc4-007 3665958-3667238 retained_intron
  ENSMUST00000148313 Tmc4-004 3670674-3676627 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonKidneyLiverLungOvaryPlacentaENSMUST00000038743ENSMUST00000121743ENSMUST00000148313
Transcript ID Adipose Bladder Breast Colon Kidney Liver Lung Ovary Placenta
ENSMUST00000038743 17.212±0.25 46.617±8.54 13.389±1.26 115.524±9.51 14.552±5.89 4.247±0.01 27.141±2.23 15.091±1.64 24.453±4.35
ENSMUST00000121743 N/A N/A 13.682±0.00 N/A N/A 1.941±0.58 N/A 16.806±1.58 31.110±1.69
ENSMUST00000148313 N/A N/A 16.144±5.43 138.792±16.33 9.800±0.00 N/A 18.463±0.90 18.022±2.98 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U4 CIL_0001U4_0002 CGP 7:3645290-3665840
CIL_0001GV CIL_0001GV_0002 CGP 7:3660098-3677524
CIL_0001JN CIL_0001JN_0002 CGP 7:3665790-3693523

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031757 tmc4 transmembrane channel-like 4 protein_coding Danio_rerio
ENSG00000167608 TMC4 transmembrane channel-like 4 protein_coding Homo_sapiens

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