C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001GV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000105617-ENSG00000167608 CGP 9606 19:54155161-54173250
GeneTranscriptPositionBiotype
ENSG00000088038 (CNOT3)
CCR4-NOT transcription complex, subunit 3 		ENST00000221232 (CNOT3-001) 54137728-54155681 protein_coding
ENST00000358389 (CNOT3-003) 54141396-54155680 protein_coding
ENST00000440571 (CNOT3-009) 54143730-54148697 protein_coding
ENST00000447684 (CNOT3-201) 54144005-54155680 protein_coding
ENST00000457463 (CNOT3-006) 54149560-54154455 protein_coding
ENST00000471126 (CNOT3-011) 54153724-54155681 protein_coding
ENST00000496327 (CNOT3-010) 54149730-54153819 processed_transcript
ENST00000613073 (CNOT3-005) 54143737-54155681 nonsense_mediated_decay
ENST00000617930 (CNOT3-007) 54153003-54155681 retained_intron
ENST00000618939 (CNOT3-002) 54137787-54155680 retained_intron
ENSG00000105617 (LENG1)
leukocyte receptor cluster (LRC) member 1 		ENST00000222224 (LENG1-001) 54155161-54159882 protein_coding
ENSG00000167608 (TMC4)
transmembrane channel-like 4 		ENST00000446291 (TMC4-002) 54168171-54172752 protein_coding
ENST00000476013 (TMC4-004) 54164539-54171949 processed_transcript
ENST00000495398 (TMC4-006) 54162226-54163267 retained_intron
ENST00000497518 (TMC4-008) 54164552-54168482 retained_intron
ENST00000611183 (TMC4-009) 54160108-54160649 retained_intron
ENST00000613492 (TMC4-003) 54163108-54173160 processed_transcript
ENST00000613723 (TMC4-010) 54160108-54164716 retained_intron
ENST00000615945 (TMC4-007) 54160108-54160972 nonsense_mediated_decay
ENST00000617472 (TMC4-011) 54160165-54173250 protein_coding
ENST00000619895 (TMC4-001) 54160108-54173171 protein_coding

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0001GV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000078813-ENSMUSG00000019734 CGP 10090 7:3660098-3677524
GeneTranscriptPositionBiotype
ENSMUSG00000019734 (Tmc4)
transmembrane channel-like gene family 4 		ENSMUST00000038743 (Tmc4-001) 3665790-3677510 protein_coding
ENSMUST00000121743 (Tmc4-002) 3665791-3676793 protein_coding
ENSMUST00000130689 (Tmc4-005) 3675159-3677484 retained_intron
ENSMUST00000136678 (Tmc4-006) 3667442-3670482 retained_intron
ENSMUST00000144751 (Tmc4-003) 3670691-3677524 retained_intron
ENSMUST00000145034 (Tmc4-007) 3665958-3667238 retained_intron
ENSMUST00000148313 (Tmc4-004) 3670674-3676627 retained_intron
ENSMUSG00000035632 (Cnot3)
CCR4-NOT transcription complex, subunit 3 		ENSMUST00000038913 (Cnot3-002) 3645352-3661100 protein_coding
ENSMUST00000129973 (Cnot3-005) 3658172-3661100 retained_intron
ENSMUST00000132344 (Cnot3-006) 3651309-3655827 protein_coding
ENSMUST00000135977 (Cnot3-003) 3651808-3658741 nonsense_mediated_decay
ENSMUST00000143085 (Cnot3-001) 3645290-3661108 retained_intron
ENSMUST00000144097 (Cnot3-004) 3658745-3661100 retained_intron
ENSMUST00000160200 (Cnot3-007) 3659390-3661100 protein_coding
ENSMUSG00000078813 (Leng1)
leukocyte receptor cluster (LRC) member 1 		ENSMUST00000019878 (Leng1-001) 3660098-3665840 protein_coding

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001GV_0001ENSG00000088038ENST00000221232ENST00000358389ENST00000440571ENST00000447684ENST00000457463ENST00000471126ENST00000496327ENST00000613073ENST00000617930ENST00000618939ENSG00000105617ENST00000222224ENSG00000167608ENST00000446291ENST00000476013ENST00000495398ENST00000497518ENST00000611183ENST00000613492ENST00000613723ENST00000615945ENST00000617472ENST00000619895CIL_0001GV_0002ENSMUSG00000019734ENSMUST00000038743ENSMUST00000121743ENSMUST00000130689ENSMUST00000136678ENSMUST00000144751ENSMUST00000145034ENSMUST00000148313ENSMUSG00000035632ENSMUST00000038913ENSMUST00000129973ENSMUST00000132344ENSMUST00000135977ENSMUST00000143085ENSMUST00000144097ENSMUST00000160200ENSMUSG00000078813ENSMUST00000019878
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001GV_0001ENSG00000088038ENST00000221232ENST00000358389ENST00000440571ENST00000617930ENST00000618939ENSG00000105617ENST00000222224ENSG00000167608ENST00000446291ENST00000476013ENST00000495398ENST00000611183ENST00000613492ENST00000613723ENST00000617472ENST00000619895CIL_0001GV_0002ENSMUSG00000019734ENSMUST00000038743ENSMUST00000121743ENSMUST00000148313ENSMUSG00000035632ENSMUST00000038913ENSMUST00000129973ENSMUST00000132344ENSMUST00000135977ENSMUST00000143085ENSMUSG00000078813ENSMUST00000019878
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000088038 ENST00000221232 9.542±0.00 11.352±0.00 1.375±0.00 3.396±2.29 4.462±3.37 4.311±3.13 4.552±0.00 6.313±5.42 2.884±0.99 4.148±3.58 9.147±0.00 16.209±9.16 13.984±2.57 34.730±19.74
ENST00000358389 N/A N/A 0.839±0.00 0.643±0.00 0.709±0.00 0.382±0.00 N/A N/A N/A 0.577±0.00 N/A N/A N/A N/A
ENST00000440571 5.660±0.00 N/A N/A 4.785±0.00 N/A N/A N/A N/A N/A 10.237±0.00 2.459±0.00 N/A N/A N/A
ENST00000447684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617930 N/A N/A N/A N/A 1.082±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618939 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.268±0.00 N/A N/A N/A N/A
ENSG00000105617 ENST00000222224 6.544±0.00 18.878±0.00 0.660±0.00 3.378±2.82 5.715±4.86 6.912±6.04 2.501±1.79 11.844±0.00 2.904±1.76 5.618±4.97 9.814±0.00 20.362±0.47 11.286±2.15 18.923±1.92
ENSG00000167608 ENST00000446291 N/A 0.968±0.00 N/A N/A N/A N/A 0.090±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000476013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.967±0.00 6.952±0.00 N/A
ENST00000495398 N/A 0.658±0.00 N/A N/A N/A N/A 0.477±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000497518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.390±0.00 N/A N/A N/A
ENST00000613492 N/A N/A N/A N/A N/A 3.123±0.00 N/A N/A 1.344±0.00 N/A N/A 2.603±0.00 N/A N/A
ENST00000613723 0.182±0.00 N/A N/A 0.125±0.00 N/A N/A 0.156±0.00 N/A 1.328±0.95 N/A 0.169±0.00 1.251±0.00 N/A 0.530±0.23
ENST00000615945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617472 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.385±2.54 N/A N/A
ENST00000619895 N/A N/A 1.038±0.00 N/A 5.130±3.01 4.115±0.00 0.281±0.00 17.160±0.00 0.360±0.06 7.805±6.06 N/A 9.045±4.37 7.526±5.52 1.245±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000019734 ENSMUST00000038743 17.212±0.25 N/A 46.617±8.54 N/A 13.389±1.26 115.524±9.51 N/A 14.552±5.89 4.247±0.01 27.141±2.23 N/A 15.091±1.64 24.453±4.35 N/A
ENSMUST00000121743 N/A N/A N/A N/A 13.682±0.00 N/A N/A N/A 1.941±0.58 N/A N/A 16.806±1.58 31.110±1.69 N/A
ENSMUST00000130689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136678 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148313 N/A N/A N/A N/A 16.144±5.43 138.792±16.33 N/A 9.800±0.00 N/A 18.463±0.90 N/A 18.022±2.98 N/A N/A
ENSMUSG00000035632 ENSMUST00000038913 6.700±1.37 N/A 10.360±0.00 11.529±2.29 6.149±1.68 N/A 1.431±0.38 4.457±0.73 8.678±6.24 7.311±1.24 3.066±0.72 15.218±10.05 28.751±15.28 5.315±1.75
ENSMUST00000129973 N/A 9.074±1.81 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132344 N/A N/A N/A 15.671±0.00 N/A N/A N/A N/A N/A N/A N/A 46.679±0.00 47.631±0.00 9.414±0.00
ENSMUST00000135977 4.573±1.82 8.775±0.94 N/A 5.282±0.00 6.878±1.64 N/A 2.323±0.11 4.091±0.00 3.556±0.96 7.462±0.00 N/A 7.624±1.85 N/A 2.826±0.32
ENSMUST00000143085 N/A 3.561±0.49 N/A 3.324±0.00 N/A N/A N/A N/A 1.746±0.54 N/A 2.091±0.67 N/A N/A 1.920±0.00
ENSMUST00000144097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160200 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000078813 ENSMUST00000019878 8.179±1.93 9.022±0.65 16.590±3.75 7.313±1.25 8.623±0.60 N/A 5.008±1.31 9.183±1.74 6.371±2.13 N/A 3.706±0.35 14.693±4.72 18.055±6.49 5.906±0.50

Loading