C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001U4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000088038-ENSG00000105617 CGP 9606 19:54137728-54159882
GeneTranscriptPositionBiotype
ENSG00000088038 (CNOT3)
CCR4-NOT transcription complex, subunit 3 		ENST00000221232 (CNOT3-001) 54137728-54155681 protein_coding
ENST00000358389 (CNOT3-003) 54141396-54155680 protein_coding
ENST00000440571 (CNOT3-009) 54143730-54148697 protein_coding
ENST00000447684 (CNOT3-201) 54144005-54155680 protein_coding
ENST00000457463 (CNOT3-006) 54149560-54154455 protein_coding
ENST00000471126 (CNOT3-011) 54153724-54155681 protein_coding
ENST00000496327 (CNOT3-010) 54149730-54153819 processed_transcript
ENST00000613073 (CNOT3-005) 54143737-54155681 nonsense_mediated_decay
ENST00000617930 (CNOT3-007) 54153003-54155681 retained_intron
ENST00000618939 (CNOT3-002) 54137787-54155680 retained_intron
ENSG00000105617 (LENG1)
leukocyte receptor cluster (LRC) member 1 		ENST00000222224 (LENG1-001) 54155161-54159882 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0001U4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035632-ENSMUSG00000078813 CGP 10090 7:3645290-3665840
GeneTranscriptPositionBiotype
ENSMUSG00000019734 (Tmc4)
transmembrane channel-like gene family 4 		ENSMUST00000038743 (Tmc4-001) 3665790-3677510 protein_coding
ENSMUST00000121743 (Tmc4-002) 3665791-3676793 protein_coding
ENSMUST00000130689 (Tmc4-005) 3675159-3677484 retained_intron
ENSMUST00000136678 (Tmc4-006) 3667442-3670482 retained_intron
ENSMUST00000144751 (Tmc4-003) 3670691-3677524 retained_intron
ENSMUST00000145034 (Tmc4-007) 3665958-3667238 retained_intron
ENSMUST00000148313 (Tmc4-004) 3670674-3676627 retained_intron
ENSMUSG00000035632 (Cnot3)
CCR4-NOT transcription complex, subunit 3 		ENSMUST00000038913 (Cnot3-002) 3645352-3661100 protein_coding
ENSMUST00000129973 (Cnot3-005) 3658172-3661100 retained_intron
ENSMUST00000132344 (Cnot3-006) 3651309-3655827 protein_coding
ENSMUST00000135977 (Cnot3-003) 3651808-3658741 nonsense_mediated_decay
ENSMUST00000143085 (Cnot3-001) 3645290-3661108 retained_intron
ENSMUST00000144097 (Cnot3-004) 3658745-3661100 retained_intron
ENSMUST00000160200 (Cnot3-007) 3659390-3661100 protein_coding
ENSMUSG00000078813 (Leng1)
leukocyte receptor cluster (LRC) member 1 		ENSMUST00000019878 (Leng1-001) 3660098-3665840 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001U4_0001ENSG00000088038ENST00000221232ENST00000358389ENST00000440571ENST00000447684ENST00000457463ENST00000471126ENST00000496327ENST00000613073ENST00000617930ENST00000618939ENSG00000105617ENST00000222224CIL_0001U4_0002ENSMUSG00000019734ENSMUST00000038743ENSMUST00000121743ENSMUST00000130689ENSMUST00000136678ENSMUST00000144751ENSMUST00000145034ENSMUST00000148313ENSMUSG00000035632ENSMUST00000038913ENSMUST00000129973ENSMUST00000132344ENSMUST00000135977ENSMUST00000143085ENSMUST00000144097ENSMUST00000160200ENSMUSG00000078813ENSMUST00000019878
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001U4_0001ENSG00000088038ENST00000221232ENST00000358389ENST00000440571ENST00000617930ENST00000618939ENSG00000105617ENST00000222224CIL_0001U4_0002ENSMUSG00000019734ENSMUST00000038743ENSMUST00000121743ENSMUST00000148313ENSMUSG00000035632ENSMUST00000038913ENSMUST00000129973ENSMUST00000132344ENSMUST00000135977ENSMUST00000143085ENSMUSG00000078813ENSMUST00000019878
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000088038 ENST00000221232 9.542±0.00 11.352±0.00 1.375±0.00 3.396±2.29 4.462±3.37 4.311±3.13 4.552±0.00 6.313±5.42 2.884±0.99 4.148±3.58 9.147±0.00 16.209±9.16 13.984±2.57 34.730±19.74
ENST00000358389 N/A N/A 0.839±0.00 0.643±0.00 0.709±0.00 0.382±0.00 N/A N/A N/A 0.577±0.00 N/A N/A N/A N/A
ENST00000440571 5.660±0.00 N/A N/A 4.785±0.00 N/A N/A N/A N/A N/A 10.237±0.00 2.459±0.00 N/A N/A N/A
ENST00000447684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617930 N/A N/A N/A N/A 1.082±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618939 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.268±0.00 N/A N/A N/A N/A
ENSG00000105617 ENST00000222224 6.544±0.00 18.878±0.00 0.660±0.00 3.378±2.82 5.715±4.86 6.912±6.04 2.501±1.79 11.844±0.00 2.904±1.76 5.618±4.97 9.814±0.00 20.362±0.47 11.286±2.15 18.923±1.92
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000019734 ENSMUST00000038743 17.212±0.25 N/A 46.617±8.54 N/A 13.389±1.26 115.524±9.51 N/A 14.552±5.89 4.247±0.01 27.141±2.23 N/A 15.091±1.64 24.453±4.35 N/A
ENSMUST00000121743 N/A N/A N/A N/A 13.682±0.00 N/A N/A N/A 1.941±0.58 N/A N/A 16.806±1.58 31.110±1.69 N/A
ENSMUST00000130689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136678 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148313 N/A N/A N/A N/A 16.144±5.43 138.792±16.33 N/A 9.800±0.00 N/A 18.463±0.90 N/A 18.022±2.98 N/A N/A
ENSMUSG00000035632 ENSMUST00000038913 6.700±1.37 N/A 10.360±0.00 11.529±2.29 6.149±1.68 N/A 1.431±0.38 4.457±0.73 8.678±6.24 7.311±1.24 3.066±0.72 15.218±10.05 28.751±15.28 5.315±1.75
ENSMUST00000129973 N/A 9.074±1.81 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132344 N/A N/A N/A 15.671±0.00 N/A N/A N/A N/A N/A N/A N/A 46.679±0.00 47.631±0.00 9.414±0.00
ENSMUST00000135977 4.573±1.82 8.775±0.94 N/A 5.282±0.00 6.878±1.64 N/A 2.323±0.11 4.091±0.00 3.556±0.96 7.462±0.00 N/A 7.624±1.85 N/A 2.826±0.32
ENSMUST00000143085 N/A 3.561±0.49 N/A 3.324±0.00 N/A N/A N/A N/A 1.746±0.54 N/A 2.091±0.67 N/A N/A 1.920±0.00
ENSMUST00000144097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160200 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000078813 ENSMUST00000019878 8.179±1.93 9.022±0.65 16.590±3.75 7.313±1.25 8.623±0.60 N/A 5.008±1.31 9.183±1.74 6.371±2.13 N/A 3.706±0.35 14.693±4.72 18.055±6.49 5.906±0.50

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