C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: catenin (cadherin associated protein), alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042345 Ctnna1-201 ENSMUSG00000037815 10090 + 18:35118888-35254773 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042345
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042345 32.302±7.59 30.063±2.58 69.578±10.17 15.053±3.43 22.654±6.22 65.858±3.32 72.752±4.98 39.662±2.57 16.774±2.20 92.410±1.25 10.276±0.75 51.882±33.79 126.767±67.79 4.899±3.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005DA CIL_0005DA_0002 CGP 18:34937414-35254773
CIL_00062R CIL_00062R_0003 CGP 18:35118888-35254773

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001541 IEA ovarian follicle development
GO:0001669 IEA acrosomal vesicle
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005911 IEA cell-cell junction
GO:0005912 IDA adherens junction
GO:0005913 IDA cell-cell adherens junction
GO:0005915 IDA zonula adherens
GO:0005925 IEA focal adhesion
GO:0007163 IMP establishment or maintenance of cell polarity
GO:0007406 IGI negative regulation of neuroblast proliferation
GO:0007568 IEA aging
GO:0008013 IEA beta-catenin binding
GO:0008584 IEA male gonad development
GO:0014070 IEA response to organic cyclic compound
GO:0014704 IDA intercalated disc
GO:0015629 IEA actin cytoskeleton
GO:0016264 IEA gap junction assembly
GO:0016342 IEA catenin complex
GO:0017166 IEA vinculin binding
GO:0030027 IDA lamellipodium
GO:0031103 IEA axon regeneration
GO:0034613 IMP cellular protein localization
GO:0042127 IGI regulation of cell proliferation
GO:0042475 IEA odontogenesis of dentin-containing tooth
GO:0043066 IMP negative regulation of apoptotic process
GO:0043297 IMP apical junction assembly
GO:0043627 IEA response to estrogen
GO:0044822 IEA poly(A) RNA binding
GO:0045295 IEA gamma-catenin binding
GO:0045296 IEA cadherin binding
GO:0045880 IGI positive regulation of smoothened signaling pathway
GO:0051015 IDA actin filament binding
GO:0051291 IEA protein heterooligomerization
GO:0071681 IEA cellular response to indole-3-methanol
GO:0090136 IMP epithelial cell-cell adhesion
GO:2000146 IMP negative regulation of cell motility
GO:2001045 IMP negative regulation of integrin-mediated signaling pathway
GO:2001240 IMP negative regulation of extrinsic apoptotic signaling pathway in absence of ligand
GO:2001241 IMP positive regulation of extrinsic apoptotic signaling pathway in absence of ligand

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000052441 ctnna1-001 protein_coding Danio_rerio 0 1868
ENSDART00000138627 ctnna1-002 protein_coding Danio_rerio 0 1238
ENSDART00000140050 ctnna1-201 protein_coding Danio_rerio 0 1236
ENSDART00000101306 ctnna2-002 protein_coding Danio_rerio 0 1123
ENSDART00000153506 ctnna2-202 protein_coding Danio_rerio 0 843
ENST00000302763 CTNNA1-001 protein_coding Homo_sapiens 0 3862
ENST00000515849 CTNNAP1-001 processed_pseudogene Homo_sapiens 0 2534
ENST00000517533 CTNNA1-027 protein_coding Homo_sapiens 0 597
ENST00000517534 CTNNA1-020 retained_intron Homo_sapiens 0 490
ENST00000517656 CTNNA1-029 protein_coding Homo_sapiens 0 257
ENST00000517904 CTNNA1-042 retained_intron Homo_sapiens 0 460
ENST00000517980 CTNNA1-015 protein_coding Homo_sapiens 0 525
ENST00000518381 CTNNA1-038 protein_coding Homo_sapiens 0 416
ENST00000518585 CTNNA1-018 processed_transcript Homo_sapiens 0 634
ENST00000518825 CTNNA1-006 protein_coding Homo_sapiens 0 3395
ENST00000518910 CTNNA1-014 protein_coding Homo_sapiens 0 686
ENST00000518919 CTNNA1-045 retained_intron Homo_sapiens 0 374
ENST00000519113 CTNNA1-010 protein_coding Homo_sapiens 0 630
ENST00000519116 CTNNA1-028 protein_coding Homo_sapiens 0 481
ENST00000519309 CTNNA1-012 nonsense_mediated_decay Homo_sapiens 0 861
ENST00000519634 CTNNA1-031 protein_coding Homo_sapiens 0 315
ENST00000519768 CTNNA1-035 protein_coding Homo_sapiens 1.4013e-45 187
ENST00000520158 CTNNA1-011 protein_coding Homo_sapiens 0 952
ENST00000520260 CTNNA1-024 protein_coding Homo_sapiens 0 226
ENST00000520339 CTNNA1-008 protein_coding Homo_sapiens 0 472
ENST00000520400 CTNNA1-021 processed_transcript Homo_sapiens 0 597
ENST00000520520 CTNNA1-040 protein_coding Homo_sapiens 0 412
ENST00000520522 CTNNA1-037 protein_coding Homo_sapiens 0 315
ENST00000520865 CTNNA1-026 protein_coding Homo_sapiens 0 243
ENST00000521387 CTNNA1-039 retained_intron Homo_sapiens 0 998
ENST00000521640 CTNNA1-034 protein_coding Homo_sapiens 0 265
ENST00000521683 CTNNA1-036 protein_coding Homo_sapiens 0 403
ENST00000521724 CTNNA1-003 nonsense_mediated_decay Homo_sapiens 0 3345
ENST00000522013 CTNNA1-023 protein_coding Homo_sapiens 0 529
ENST00000522052 CTNNA1-043 nonsense_mediated_decay Homo_sapiens 0 503
ENST00000522227 CTNNA1-017 protein_coding Homo_sapiens 0 555
ENST00000522730 CTNNA1-046 retained_intron Homo_sapiens 0 329
ENST00000522792 CTNNA1-005 retained_intron Homo_sapiens 0 579
ENST00000523275 CTNNA1-019 nonsense_mediated_decay Homo_sapiens 0 425
ENST00000523298 CTNNA1-030 protein_coding Homo_sapiens 0 551
ENST00000523685 CTNNA1-025 protein_coding Homo_sapiens 0 640
ENST00000523912 CTNNA1-007 protein_coding Homo_sapiens 0 712
ENST00000524127 CTNNA1-016 protein_coding Homo_sapiens 0 433
ENST00000540387 CTNNA1-201 protein_coding Homo_sapiens 0 2327

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