C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: catenin (cadherin-associated protein), alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000052441 ctnna1-001 ENSDARG00000077846 7955 - 24:35832742-36025382 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000052441
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000052441 1.533±0.86 42.330±23.15 18.542±12.84 2.307±0.00 2.805±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062R CIL_00062R_0001 CGP 24:35832742-36171912

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005902 IDA microvillus
GO:0005913 IDA cell-cell adherens junction
GO:0005938 IDA cell cortex
GO:0007155 IEA cell adhesion
GO:0015629 IEA actin cytoskeleton
GO:0016342 IDA catenin complex
GO:0045296 IEA cadherin binding
GO:0051015 IDA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042345 Ctnna1-201 protein_coding Mus_musculus 0 1868
ENSMUST00000075099 Ctnna3-201 protein_coding Mus_musculus 0 228
ENSMUST00000075340 Ctnna2-201 protein_coding Mus_musculus 0 1179
ENSMUST00000105440 Ctnna3-002 protein_coding Mus_musculus 0 228
ENSMUST00000105441 Ctnna3-001 protein_coding Mus_musculus 0 228
ENSMUST00000159626 Ctnna2-003 protein_coding Mus_musculus 0 1114
ENSMUST00000160894 Ctnna2-002 protein_coding Mus_musculus 0 1114
ENSMUST00000161846 Ctnna2-001 protein_coding Mus_musculus 0 1179
ENST00000373735 CTNNA3-005 processed_transcript Homo_sapiens 4.99997e-41 172
ENST00000433211 CTNNA3-001 protein_coding Homo_sapiens 5e-40 172

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