C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: catenin (cadherin-associated protein), alpha 1, 102kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000518825 CTNNA1-006 ENSG00000044115 9606 + 5:138781923-138934831 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleTestisENST00000518825
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Testis
ENST00000518825 38.548±0.00 27.078±0.00 35.525±0.00 37.547±0.00 46.143±0.00 30.866±0.00 41.654±0.00 9.616±0.00 51.423±0.00 20.288±0.00 26.590±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005DA CIL_0005DA_0001 CGP 5:138554882-138935034
CIL_00062R CIL_00062R_0002 CGP 5:138610967-138935034

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0007155 IEA cell adhesion
GO:0015629 IEA actin cytoskeleton
GO:0045296 IEA cadherin binding
GO:0051015 IEA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042345 Ctnna1-201 protein_coding Mus_musculus 0 3395
ENSMUST00000159626 Ctnna2-003 protein_coding Mus_musculus 0 1029
ENSMUST00000160894 Ctnna2-002 protein_coding Mus_musculus 0 1029
ENSMUST00000075340 Ctnna2-201 protein_coding Mus_musculus 0 1027
ENSMUST00000161846 Ctnna2-001 protein_coding Mus_musculus 0 1027
ENSDART00000153506 ctnna2-202 protein_coding Danio_rerio 1e-21 110
ENSDART00000101306 ctnna2-002 protein_coding Danio_rerio 1e-21 110

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