C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: catenin (cadherin-associated protein), alpha 1, 102kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000540387 CTNNA1-201 ENSG00000044115 9606 + 5:138875653-138935028 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalKidneyLiverOvaryTestisENST00000540387
Transcript ID Adrenal Kidney Liver Ovary Testis
ENST00000540387 17.041±0.00 23.923±0.00 6.757±0.00 15.380±0.00 9.401±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005DA CIL_0005DA_0001 CGP 5:138554882-138935034
CIL_00062R CIL_00062R_0002 CGP 5:138610967-138935034

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0005886 TAS plasma membrane
GO:0005911 IDA cell-cell junction
GO:0005925 IDA focal adhesion
GO:0007155 NAS:IEA cell adhesion
GO:0008013 IPI beta-catenin binding
GO:0015629 IEA actin cytoskeleton
GO:0016342 IDA catenin complex
GO:0017166 IPI vinculin binding
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0042692 TAS muscle cell differentiation
GO:0043297 NAS apical junction assembly
GO:0044822 IDA poly(A) RNA binding
GO:0045216 TAS cell-cell junction organization
GO:0045295 IPI gamma-catenin binding
GO:0045296 IEA:IPI cadherin binding
GO:0051015 IEA actin filament binding
GO:0051149 TAS positive regulation of muscle cell differentiation
GO:0071681 IDA cellular response to indole-3-methanol

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042345 Ctnna1-201 protein_coding Mus_musculus 0 2327
ENSMUST00000075340 Ctnna2-201 protein_coding Mus_musculus 0 1000
ENSMUST00000161846 Ctnna2-001 protein_coding Mus_musculus 0 1000
ENSDART00000101306 ctnna2-002 protein_coding Danio_rerio 0 937
ENSMUST00000159626 Ctnna2-003 protein_coding Mus_musculus 0 896
ENSMUST00000160894 Ctnna2-002 protein_coding Mus_musculus 0 896
ENSDART00000153506 ctnna2-202 protein_coding Danio_rerio 0 793

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