C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCR4-NOT transcription complex, subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000143085 Cnot3-001 ENSMUSG00000035632 10090 + 7:3645290-3661108 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainLiverMuscleTestisENSMUST00000143085
Transcript ID Adrenal Brain Liver Muscle Testis
ENSMUST00000143085 3.561±0.49 3.324±0.00 1.746±0.54 2.091±0.67 1.920±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005OD CIL_0005OD_0002 CGP 7:3629985-3661108
CIL_0001U4 CIL_0001U4_0002 CGP 7:3645290-3665840

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000137699 cnot3a-001 protein_coding Danio_rerio 0 494
ENSDART00000102100 cnot3a-201 protein_coding Danio_rerio 0 481
ENSDART00000136697 cnot3b-001 protein_coding Danio_rerio 0 385
ENSDART00000081485 cnot3b-202 protein_coding Danio_rerio 0 377
ENST00000221232 CNOT3-001 protein_coding Homo_sapiens 0 1881
ENST00000222224 LENG1-001 protein_coding Homo_sapiens 0 555
ENST00000358389 CNOT3-003 protein_coding Homo_sapiens 0 1816
ENST00000440571 CNOT3-009 protein_coding Homo_sapiens 0 1341
ENST00000447684 CNOT3-201 protein_coding Homo_sapiens 0 998
ENST00000457463 CNOT3-006 protein_coding Homo_sapiens 0 1003
ENST00000471126 CNOT3-011 protein_coding Homo_sapiens 0 540
ENST00000496327 CNOT3-010 processed_transcript Homo_sapiens 0 625
ENST00000610829 CNOT3-217 protein_coding Homo_sapiens 0 987
ENST00000610883 CNOT3-211 protein_coding Homo_sapiens 0 1869
ENST00000610998 LENG1-001 protein_coding Homo_sapiens 9e-18 95
ENST00000611252 CNOT3-214 protein_coding Homo_sapiens 0 1869
ENST00000611667 CNOT3-224 protein_coding Homo_sapiens 0 987
ENST00000612029 CNOT3-002 retained_intron Homo_sapiens 0 1310
ENST00000612466 CNOT3-006 retained_intron Homo_sapiens 0 540
ENST00000612729 CNOT3-009 protein_coding Homo_sapiens 0 1330
ENST00000612924 CNOT3-205 protein_coding Homo_sapiens 0 1869
ENST00000613028 CNOT3-011 protein_coding Homo_sapiens 0 540
ENST00000613073 CNOT3-005 nonsense_mediated_decay Homo_sapiens 0 998
ENST00000613470 CNOT3-010 processed_transcript Homo_sapiens 0 625
ENST00000613528 CNOT3-225 protein_coding Homo_sapiens 0 1805
ENST00000613622 LENG1-001 protein_coding Homo_sapiens 1e-26 124
ENST00000613636 CNOT3-208 protein_coding Homo_sapiens 0 987
ENST00000613752 CNOT3-202 protein_coding Homo_sapiens 0 1805
ENST00000614037 LENG1-203 protein_coding Homo_sapiens 0.000000000000002 88
ENST00000614542 CNOT3-005 nonsense_mediated_decay Homo_sapiens 0 987
ENST00000614598 CNOT3-212 protein_coding Homo_sapiens 0 987
ENST00000614649 CNOT3-206 protein_coding Homo_sapiens 0 1805
ENST00000615030 CNOT3-209 protein_coding Homo_sapiens 0 1805
ENST00000615034 CNOT3-003 retained_intron Homo_sapiens 0 538
ENST00000615038 CNOT3-005 retained_intron Homo_sapiens 0 540
ENST00000615532 CNOT3-006 protein_coding Homo_sapiens 0 1003
ENST00000615629 CNOT3-003 retained_intron Homo_sapiens 0 538
ENST00000616102 CNOT3-220 protein_coding Homo_sapiens 0 987
ENST00000616103 LENG1-001 protein_coding Homo_sapiens 1e-27 128
ENST00000616264 CNOT3-004 protein_coding Homo_sapiens 0 267
ENST00000616359 CNOT3-210 protein_coding Homo_sapiens 0 1869
ENST00000616816 LENG1-204 protein_coding Homo_sapiens 0.000000000000002 88
ENST00000616910 CNOT3-226 protein_coding Homo_sapiens 0 1869
ENST00000617218 CNOT3-207 protein_coding Homo_sapiens 0 987
ENST00000617371 CNOT3-006 retained_intron Homo_sapiens 0 540
ENST00000617592 LENG1-206 protein_coding Homo_sapiens 0.000000000000002 88
ENST00000617930 CNOT3-007 retained_intron Homo_sapiens 0 540
ENST00000617936 CNOT3-002 retained_intron Homo_sapiens 0 721
ENST00000617982 CNOT3-001 protein_coding Homo_sapiens 0 1869
ENST00000618130 CNOT3-005 retained_intron Homo_sapiens 0 540
ENST00000618405 CNOT3-221 protein_coding Homo_sapiens 0 1805
ENST00000618717 CNOT3-001 protein_coding Homo_sapiens 0 798
ENST00000618939 CNOT3-002 retained_intron Homo_sapiens 0 1321
ENST00000619316 CNOT3-001 protein_coding Homo_sapiens 0 798
ENST00000619347 CNOT3-203 protein_coding Homo_sapiens 0 987
ENST00000619557 CNOT3-215 protein_coding Homo_sapiens 0 987
ENST00000619567 CNOT3-216 protein_coding Homo_sapiens 0 1805
ENST00000619669 LENG1-202 protein_coding Homo_sapiens 0.000000000000002 88
ENST00000619854 CNOT3-204 protein_coding Homo_sapiens 0 1869
ENST00000620060 CNOT3-222 protein_coding Homo_sapiens 0 1869
ENST00000620419 CNOT3-218 protein_coding Homo_sapiens 0 1805
ENST00000620573 CNOT3-219 protein_coding Homo_sapiens 0 1869
ENST00000620970 CNOT3-003 protein_coding Homo_sapiens 0 1805
ENST00000621174 CNOT3-002 retained_intron Homo_sapiens 0 721
ENST00000621285 LENG1-205 protein_coding Homo_sapiens 0.000000000000002 88
ENST00000621927 LENG1-201 protein_coding Homo_sapiens 0.000000000000002 88
ENST00000622080 CNOT3-004 protein_coding Homo_sapiens 0 267
ENST00000622131 CNOT3-213 protein_coding Homo_sapiens 0 1805
ENST00000622193 CNOT3-223 protein_coding Homo_sapiens 0 987
ENST00000622342 CNOT3-007 retained_intron Homo_sapiens 0 540

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