C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCR4-NOT transcription complex, subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000135977 Cnot3-003 ENSMUSG00000035632 10090 + 7:3651808-3658741 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungOvaryTestisENSMUST00000135977
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Ovary Testis
ENSMUST00000135977 4.573±1.82 8.775±0.94 5.282±0.00 6.878±1.64 2.323±0.11 4.091±0.00 3.556±0.96 7.462±0.00 7.624±1.85 2.826±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005OD CIL_0005OD_0002 CGP 7:3629985-3661108
CIL_0001U4 CIL_0001U4_0002 CGP 7:3645290-3665840

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000102100 cnot3a-201 protein_coding Danio_rerio 7e-37 159
ENSDART00000137699 cnot3a-001 protein_coding Danio_rerio 7e-37 159
ENST00000221232 CNOT3-001 protein_coding Homo_sapiens 0 1940
ENST00000358389 CNOT3-003 protein_coding Homo_sapiens 0 1940
ENST00000440571 CNOT3-009 protein_coding Homo_sapiens 0 1079
ENST00000447684 CNOT3-201 protein_coding Homo_sapiens 0 2335
ENST00000457463 CNOT3-006 protein_coding Homo_sapiens 0 821
ENST00000496327 CNOT3-010 processed_transcript Homo_sapiens 0 625
ENST00000610829 CNOT3-217 protein_coding Homo_sapiens 0 2324
ENST00000610883 CNOT3-211 protein_coding Homo_sapiens 0 1929
ENST00000611252 CNOT3-214 protein_coding Homo_sapiens 0 1929
ENST00000611667 CNOT3-224 protein_coding Homo_sapiens 0 2324
ENST00000612029 CNOT3-002 retained_intron Homo_sapiens 0 1929
ENST00000612729 CNOT3-009 protein_coding Homo_sapiens 0 1068
ENST00000612924 CNOT3-205 protein_coding Homo_sapiens 0 1929
ENST00000613073 CNOT3-005 nonsense_mediated_decay Homo_sapiens 0 2335
ENST00000613470 CNOT3-010 processed_transcript Homo_sapiens 0 625
ENST00000613528 CNOT3-225 protein_coding Homo_sapiens 0 1929
ENST00000613636 CNOT3-208 protein_coding Homo_sapiens 0 2324
ENST00000613752 CNOT3-202 protein_coding Homo_sapiens 0 1929
ENST00000614542 CNOT3-005 nonsense_mediated_decay Homo_sapiens 0 2324
ENST00000614598 CNOT3-212 protein_coding Homo_sapiens 0 2324
ENST00000614649 CNOT3-206 protein_coding Homo_sapiens 0 1929
ENST00000615030 CNOT3-209 protein_coding Homo_sapiens 0 1929
ENST00000615532 CNOT3-006 protein_coding Homo_sapiens 0 821
ENST00000616102 CNOT3-220 protein_coding Homo_sapiens 0 2324
ENST00000616359 CNOT3-210 protein_coding Homo_sapiens 0 1929
ENST00000616910 CNOT3-226 protein_coding Homo_sapiens 0 1929
ENST00000617218 CNOT3-207 protein_coding Homo_sapiens 0 2324
ENST00000617982 CNOT3-001 protein_coding Homo_sapiens 0 1929
ENST00000618405 CNOT3-221 protein_coding Homo_sapiens 0 1929
ENST00000618939 CNOT3-002 retained_intron Homo_sapiens 0 1940
ENST00000619347 CNOT3-203 protein_coding Homo_sapiens 0 2324
ENST00000619557 CNOT3-215 protein_coding Homo_sapiens 0 2324
ENST00000619567 CNOT3-216 protein_coding Homo_sapiens 0 1929
ENST00000619854 CNOT3-204 protein_coding Homo_sapiens 0 1929
ENST00000620060 CNOT3-222 protein_coding Homo_sapiens 0 1929
ENST00000620419 CNOT3-218 protein_coding Homo_sapiens 0 1929
ENST00000620573 CNOT3-219 protein_coding Homo_sapiens 0 1929
ENST00000620970 CNOT3-003 protein_coding Homo_sapiens 0 1929
ENST00000622131 CNOT3-213 protein_coding Homo_sapiens 0 1929
ENST00000622193 CNOT3-223 protein_coding Homo_sapiens 0 2324

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