C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, AMPA 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000620581 GRIA3-201 ENSG00000125675 9606 + X:123184371-123488736 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartOvaryPlacentaTestisENST00000620581
Transcript ID Breast Colon Heart Ovary Placenta Testis
ENST00000620581 0.153±0.00 0.481±0.00 0.526±0.00 0.048±0.00 0.217±0.00 0.428±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U7 CIL_0001U7_0001 CGP X:123184153-123733056

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004970 IEA ionotropic glutamate receptor activity
GO:0005234 IEA extracellular-glutamate-gated ion channel activity
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000139965 Gria3-002 nonsense_mediated_decay Mus_musculus 0 4656
ENSMUST00000076349 Gria3-001 protein_coding Mus_musculus 0 3906
ENSMUST00000115103 Gria3-004 protein_coding Mus_musculus 0 3832
ENSMUST00000156721 Gria3-003 retained_intron Mus_musculus 0 3816
ENSMUST00000165288 Gria3-201 protein_coding Mus_musculus 0 3773
ENSMUST00000148212 Gria3-006 retained_intron Mus_musculus 0 3016
ENSMUST00000128197 Gria3-005 retained_intron Mus_musculus 0 2939
ENSDART00000043180 gria3b-001 protein_coding Danio_rerio 0 1657
ENSMUST00000027020 Gria4-201 protein_coding Mus_musculus 0 1003
ENSMUST00000075316 Gria2-201 protein_coding Mus_musculus 0 830
ENSDART00000074671 gria2b-002 protein_coding Danio_rerio 0 773
ENSMUST00000107745 Gria2-202 protein_coding Mus_musculus 0 728
ENSMUST00000094179 Gria1-005 protein_coding Mus_musculus 0 638
ENSDART00000102782 gria2a-001 protein_coding Danio_rerio 0 556
ENSDART00000044735 gria1b-001 protein_coding Danio_rerio 0 483
ENSMUST00000126843 Gria3-008 retained_intron Mus_musculus 0 444
ENSDART00000021437 gria1a-001 protein_coding Danio_rerio 0 433
ENSMUST00000124169 Gria3-007 protein_coding Mus_musculus 0 412
ENSDART00000134602 gria2b-003 processed_transcript Danio_rerio 0 300
ENSDART00000064617 gria2b-001 protein_coding Danio_rerio 0 300
ENSDART00000049291 gria3a-001 protein_coding Danio_rerio 0 300
ENSDART00000137120 gria3a-002 protein_coding Danio_rerio 0 292
ENSDART00000077805 gria2a-002 protein_coding Danio_rerio 0 272
ENSMUST00000151045 Gria1-006 protein_coding Mus_musculus 0 259
ENSMUST00000036315 Gria1-004 protein_coding Mus_musculus 0 259
ENSMUST00000063508 Gria4-202 protein_coding Mus_musculus 0 252

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