C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, AMPA 2a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000077805 gria2a-002 ENSDARG00000070173 7955 - 1:20115772-20127124 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLiverENSDART00000077805
Transcript ID Heart Liver
ENSDART00000077805 0.183±0.12 0.107±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007F1 CIL_0007F1_0001 CGP 1:20115714-20266484

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004970 IEA ionotropic glutamate receptor activity
GO:0005215 IEA transporter activity
GO:0005234 IEA extracellular-glutamate-gated ion channel activity
GO:0006810 IEA transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000063508 Gria4-202 protein_coding Mus_musculus 0 464
ENSMUST00000076349 Gria3-001 protein_coding Mus_musculus 0 398
ENSMUST00000107745 Gria2-202 protein_coding Mus_musculus 0 510
ENSMUST00000139965 Gria3-002 nonsense_mediated_decay Mus_musculus 0 267
ENST00000282499 GRIA4-201 protein_coding Homo_sapiens 0 431
ENST00000296526 GRIA2-001 protein_coding Homo_sapiens 0 477
ENST00000323661 GRIA2-006 nonsense_mediated_decay Homo_sapiens 0 211
ENST00000393815 GRIA2-004 protein_coding Homo_sapiens 0 477
ENST00000471736 GRIA2-003 retained_intron Homo_sapiens 0 477
ENST00000507898 GRIA2-005 protein_coding Homo_sapiens 0 477
ENST00000510854 GRIA2-012 protein_coding Homo_sapiens 0 453
ENST00000525942 GRIA4-007 nonsense_mediated_decay Homo_sapiens 0 250
ENST00000530497 GRIA4-005 protein_coding Homo_sapiens 0 431
ENST00000620443 GRIA3-001 protein_coding Homo_sapiens 0 387
ENST00000620581 GRIA3-201 protein_coding Homo_sapiens 0 272

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