C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, AMPA1 (alpha 1)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036315 Gria1-004 ENSMUSG00000020524 10090 + 11:57011810-57330244 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000036315
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000036315 0.859±0.10 1.290±0.07 9.024±7.06 0.636±0.00 0.108±0.04 0.090±0.00 0.024±0.01 2.301±0.44 0.341±0.18 0.111±0.06 0.112±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001UF CIL_0001UF_0002 CGP 11:56024987-57330244
CIL_0001UG CIL_0001UG_0002 CGP 11:57011387-57518617

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004971 IBA:ISS alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity
GO:0005234 IBA extracellular-glutamate-gated ion channel activity
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005886 IDA plasma membrane
GO:0007268 IGI synaptic transmission
GO:0007616 IMP long-term memory
GO:0008021 IDA synaptic vesicle
GO:0008328 IDA ionotropic glutamate receptor complex
GO:0009986 IDA cell surface
GO:0014069 IDA postsynaptic density
GO:0016020 IDA membrane
GO:0030054 IEA cell junction
GO:0030425 IDA dendrite
GO:0031623 IMP receptor internalization
GO:0032281 IDA alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0032590 IDA dendrite membrane
GO:0034220 IBA ion transmembrane transport
GO:0035235 IBA ionotropic glutamate receptor signaling pathway
GO:0035249 IBA synaptic transmission, glutamatergic
GO:0043005 IDA neuron projection
GO:0043025 IDA neuronal cell body
GO:0043197 IDA dendritic spine
GO:0044308 IDA axonal spine
GO:0044309 IDA neuron spine
GO:0045202 ISO synapse
GO:0045211 IEA:IDA postsynaptic membrane
GO:0060292 IGI long term synaptic depression

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000285900 GRIA1-001 protein_coding Homo_sapiens 0 3832
ENST00000296526 GRIA2-001 protein_coding Homo_sapiens 0 859
ENST00000323661 GRIA2-006 nonsense_mediated_decay Homo_sapiens 5e-40 171
ENST00000340592 GRIA1-005 protein_coding Homo_sapiens 0 3819
ENST00000393815 GRIA2-004 protein_coding Homo_sapiens 0 859
ENST00000448073 GRIA1-014 protein_coding Homo_sapiens 0 3518
ENST00000460123 GRIA3-003 processed_transcript Homo_sapiens 3e-25 119
ENST00000471736 GRIA2-003 retained_intron Homo_sapiens 0 859
ENST00000474198 GRIA1-002 retained_intron Homo_sapiens 0 492
ENST00000481559 GRIA1-006 retained_intron Homo_sapiens 0 2185
ENST00000492291 GRIA1-003 processed_transcript Homo_sapiens 7e-21 104
ENST00000507898 GRIA2-005 protein_coding Homo_sapiens 0 859
ENST00000510854 GRIA2-012 protein_coding Homo_sapiens 0 429
ENST00000517469 GRIA1-012 processed_transcript Homo_sapiens 0 191
ENST00000518142 GRIA1-013 protein_coding Homo_sapiens 0 2809
ENST00000518783 GRIA1-007 protein_coding Homo_sapiens 0 3531
ENST00000518862 GRIA1-009 processed_transcript Homo_sapiens 0 749
ENST00000520353 GRIA1-008 processed_transcript Homo_sapiens 0 250
ENST00000520966 GRIA1-011 processed_transcript Homo_sapiens 0 617
ENST00000521843 GRIA1-010 protein_coding Homo_sapiens 0 3441
ENST00000541091 GRIA3-002 protein_coding Homo_sapiens 0 636
ENST00000620443 GRIA3-001 protein_coding Homo_sapiens 0 736
ENST00000620581 GRIA3-201 protein_coding Homo_sapiens 0 259
ENST00000622768 GRIA3-202 protein_coding Homo_sapiens 0 636

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