C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, AMPA1 (alpha 1)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000094179 Gria1-005 ENSMUSG00000020524 10090 + 11:57011956-57330243 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000094179
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000094179 0.057±0.07 0.068±0.03 17.399±18.11 0.358±0.13 0.098±0.04 0.038±0.02 0.024±0.01 0.030±0.00 1.268±0.08 0.005±0.00 0.020±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001UF CIL_0001UF_0002 CGP 11:56024987-57330244
CIL_0001UG CIL_0001UG_0002 CGP 11:57011387-57518617

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004971 IBA alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity
GO:0005234 IBA extracellular-glutamate-gated ion channel activity
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0007268 IGI synaptic transmission
GO:0008021 IDA synaptic vesicle
GO:0009986 IDA cell surface
GO:0016020 IDA membrane
GO:0030054 IEA cell junction
GO:0030425 IDA dendrite
GO:0032281 IDA alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0034220 IBA ion transmembrane transport
GO:0035235 IBA ionotropic glutamate receptor signaling pathway
GO:0035249 IBA synaptic transmission, glutamatergic
GO:0043197 IDA dendritic spine
GO:0044308 IDA axonal spine
GO:0045202 ISO synapse
GO:0045211 IEA postsynaptic membrane
GO:0060292 IGI long term synaptic depression

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000074671 gria2b-002 protein_coding Danio_rerio 0 896
ENSDART00000102782 gria2a-001 protein_coding Danio_rerio 0 824
ENSDART00000044735 gria1b-001 protein_coding Danio_rerio 0 771
ENSDART00000043180 gria3b-001 protein_coding Danio_rerio 0 745
ENSDART00000021437 gria1a-001 protein_coding Danio_rerio 0 676
ENST00000264426 GRIA2-002 protein_coding Homo_sapiens 0 854
ENST00000285900 GRIA1-001 protein_coding Homo_sapiens 0 3921
ENST00000323661 GRIA2-006 nonsense_mediated_decay Homo_sapiens 2e-29 135
ENST00000340592 GRIA1-005 protein_coding Homo_sapiens 0 3620
ENST00000393127 GRIA4-202 protein_coding Homo_sapiens 0 789
ENST00000448073 GRIA1-014 protein_coding Homo_sapiens 0 3319
ENST00000460123 GRIA3-003 processed_transcript Homo_sapiens 3e-25 119
ENST00000474198 GRIA1-002 retained_intron Homo_sapiens 0 387
ENST00000481559 GRIA1-006 retained_intron Homo_sapiens 0 2185
ENST00000492291 GRIA1-003 processed_transcript Homo_sapiens 7e-21 104
ENST00000503980 GRIA2-013 retained_intron Homo_sapiens 0 219
ENST00000517469 GRIA1-012 processed_transcript Homo_sapiens 0 191
ENST00000518142 GRIA1-013 protein_coding Homo_sapiens 0 3003
ENST00000518783 GRIA1-007 protein_coding Homo_sapiens 0 3725
ENST00000518862 GRIA1-009 processed_transcript Homo_sapiens 0 749
ENST00000520353 GRIA1-008 processed_transcript Homo_sapiens 0 250
ENST00000520966 GRIA1-011 processed_transcript Homo_sapiens 0 617
ENST00000521843 GRIA1-010 protein_coding Homo_sapiens 0 3635
ENST00000525187 GRIA4-006 protein_coding Homo_sapiens 0 789
ENST00000525942 GRIA4-007 nonsense_mediated_decay Homo_sapiens 0 272
ENST00000533094 GRIA4-008 processed_transcript Homo_sapiens 0 246
ENST00000541091 GRIA3-002 protein_coding Homo_sapiens 0 752
ENST00000620443 GRIA3-001 protein_coding Homo_sapiens 0 630
ENST00000620581 GRIA3-201 protein_coding Homo_sapiens 0 638
ENST00000622768 GRIA3-202 protein_coding Homo_sapiens 0 752

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