C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate receptor, ionotropic, AMPA 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000620443 GRIA3-001 ENSG00000125675 9606 + X:123184483-123490915 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonLiverMuscleOvaryTestisENST00000620443
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Liver Muscle Ovary Testis
ENST00000620443 0.039±0.00 0.114±0.00 0.064±0.00 8.081±1.90 0.104±0.03 0.075±0.00 0.076±0.00 0.037±0.03 0.151±0.14 0.350±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U7 CIL_0001U7_0001 CGP X:123184153-123733056

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004970 IEA ionotropic glutamate receptor activity
GO:0004971 IDA alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity
GO:0005234 IBA:IEA extracellular-glutamate-gated ion channel activity
GO:0005886 TAS plasma membrane
GO:0006810 TAS transport
GO:0007215 TAS glutamate receptor signaling pathway
GO:0007268 TAS synaptic transmission
GO:0016020 IEA membrane
GO:0030054 IEA cell junction
GO:0030425 IBA dendrite
GO:0030666 TAS endocytic vesicle membrane
GO:0032281 ISS alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0034220 IEA ion transmembrane transport
GO:0035235 IEA ionotropic glutamate receptor signaling pathway
GO:0035249 IBA synaptic transmission, glutamatergic
GO:0045211 IBA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076349 Gria3-001 protein_coding Mus_musculus 0 6835
ENSMUST00000115103 Gria3-004 protein_coding Mus_musculus 0 4501
ENSMUST00000165288 Gria3-201 protein_coding Mus_musculus 0 4034
ENSMUST00000139965 Gria3-002 nonsense_mediated_decay Mus_musculus 0 3747
ENSMUST00000156721 Gria3-003 retained_intron Mus_musculus 0 3675
ENSMUST00000148212 Gria3-006 retained_intron Mus_musculus 0 2994
ENSMUST00000128197 Gria3-005 retained_intron Mus_musculus 0 2939
ENSDART00000043180 gria3b-001 protein_coding Danio_rerio 0 1722
ENSDART00000049291 gria3a-001 protein_coding Danio_rerio 0 1469
ENSMUST00000063508 Gria4-202 protein_coding Mus_musculus 0 1070
ENSMUST00000107745 Gria2-202 protein_coding Mus_musculus 0 939
ENSDART00000064617 gria2b-001 protein_coding Danio_rerio 0 900
ENSMUST00000075316 Gria2-201 protein_coding Mus_musculus 0 811
ENSMUST00000151045 Gria1-006 protein_coding Mus_musculus 0 736
ENSMUST00000036315 Gria1-004 protein_coding Mus_musculus 0 736
ENSMUST00000094179 Gria1-005 protein_coding Mus_musculus 0 630
ENSMUST00000126843 Gria3-008 retained_intron Mus_musculus 0 444
ENSMUST00000124169 Gria3-007 protein_coding Mus_musculus 0 412
ENSDART00000077805 gria2a-002 protein_coding Danio_rerio 0 387
ENSDART00000134602 gria2b-003 processed_transcript Danio_rerio 0 300
ENSDART00000021437 gria1a-001 protein_coding Danio_rerio 0 298
ENSDART00000137120 gria3a-002 protein_coding Danio_rerio 0 292

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