C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter), member 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000445055 SLC6A13-201 ENSG00000010379 9606 - 12:220621-262873 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastHeartLiverTestisENST00000445055
Transcript ID Adrenal Bladder Brain Breast Heart Liver Testis
ENST00000445055 0.034±0.00 9.888±0.00 0.714±0.00 0.012±0.00 0.024±0.00 1.309±0.00 0.174±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083Y CIL_00083Y_0001 VISTA 12:106900-709490

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005332 IEA gamma-aminobutyric acid:sodium symporter activity
GO:0005886 TAS plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006836 IEA neurotransmitter transport
GO:0007268 TAS synaptic transmission
GO:0007269 TAS neurotransmitter secretion
GO:0015812 IEA gamma-aminobutyric acid transport
GO:0016021 IEA integral component of membrane
GO:0055085 IEA:TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000064580 Slc6a13-001 protein_coding Mus_musculus 0 1557
ENSMUST00000142021 Slc6a13-003 processed_transcript Mus_musculus 0 760
ENSMUST00000032200 Slc6a12-002 protein_coding Mus_musculus 0 608
ENSMUST00000166457 Slc6a12-001 protein_coding Mus_musculus 0 608
ENSMUST00000171008 Slc6a12-007 protein_coding Mus_musculus 0 586
ENSMUST00000171874 Slc6a12-004 retained_intron Mus_musculus 0 398
ENSMUST00000163771 Slc6a12-009 nonsense_mediated_decay Mus_musculus 0 315
ENSMUST00000142144 Slc6a13-002 retained_intron Mus_musculus 0 313
ENSMUST00000142419 Slc6a13-004 protein_coding Mus_musculus 0 292
ENSDART00000000838 slc6a13l-201 protein_coding Danio_rerio 0 259
ENSDART00000143577 slc6a13l-001 protein_coding Danio_rerio 0 259
ENSMUST00000168295 Slc6a12-003 protein_coding Mus_musculus 6e-28 130
ENSDART00000092131 si:ch211-117c9.5-001 protein_coding Danio_rerio 0.000000000002 79

Loading