C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171874 Slc6a12-004 ENSMUSG00000030109 10090 + 6:121356820-121361910 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderColonLungOvaryENSMUST00000171874
Transcript ID Adrenal Bladder Colon Lung Ovary
ENSMUST00000171874 0.085±0.03 0.041±0.00 0.321±0.00 0.098±0.00 0.254±0.10

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343164 SLC6A13-001 protein_coding Homo_sapiens 0 398
ENST00000359674 SLC6A12-001 protein_coding Homo_sapiens 0 839
ENST00000397296 SLC6A12-201 protein_coding Homo_sapiens 0 839
ENST00000424061 SLC6A12-002 protein_coding Homo_sapiens 0 839
ENST00000445055 SLC6A13-201 protein_coding Homo_sapiens 0 398
ENST00000535498 SLC6A12-011 processed_transcript Homo_sapiens 0 676
ENST00000536824 SLC6A12-004 protein_coding Homo_sapiens 0 839
ENST00000538272 SLC6A12-009 processed_transcript Homo_sapiens 0 309
ENST00000544782 SLC6A12-014 retained_intron Homo_sapiens 0 568
ENST00000545058 SLC6A12-013 retained_intron Homo_sapiens 0 501

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