C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163771 Slc6a12-009 ENSMUSG00000030109 10090 + 6:121356918-121365372 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastLungMuscleOvaryTestisENSMUST00000163771
Transcript ID Adrenal Bladder Breast Lung Muscle Ovary Testis
ENSMUST00000163771 0.191±0.10 0.056±0.00 0.348±0.00 0.136±0.00 0.091±0.05 0.230±0.10 0.020±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0006836 IEA neurotransmitter transport
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343164 SLC6A13-001 protein_coding Homo_sapiens 0 315
ENST00000359674 SLC6A12-001 protein_coding Homo_sapiens 0 492
ENST00000397296 SLC6A12-201 protein_coding Homo_sapiens 0 492
ENST00000424061 SLC6A12-002 protein_coding Homo_sapiens 0 492
ENST00000445055 SLC6A13-201 protein_coding Homo_sapiens 0 315
ENST00000535498 SLC6A12-011 processed_transcript Homo_sapiens 0 492
ENST00000536824 SLC6A12-004 protein_coding Homo_sapiens 0 492
ENST00000538272 SLC6A12-009 processed_transcript Homo_sapiens 0 305
ENST00000544782 SLC6A12-014 retained_intron Homo_sapiens 0 492
ENST00000545058 SLC6A12-013 retained_intron Homo_sapiens 0 953

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