C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCR4-NOT transcription complex, subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000613528 CNOT3-225 ENSG00000277615 9606 + CHR_HSCHR19LRC_PGF2_CTG3_1:54141858-54156164 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 TAS nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006417 IEA regulation of translation
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0030014 IDA CCR4-NOT complex
GO:0031047 IEA gene silencing by RNA
GO:2000036 IMP regulation of stem cell maintenance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038913 Cnot3-002 protein_coding Mus_musculus 0 3461
ENSMUST00000135977 Cnot3-003 nonsense_mediated_decay Mus_musculus 0 1929
ENSMUST00000143085 Cnot3-001 retained_intron Mus_musculus 0 1805
ENSMUST00000132344 Cnot3-006 protein_coding Mus_musculus 0 1404
ENSMUST00000129973 Cnot3-005 retained_intron Mus_musculus 0 1188
ENSMUST00000160200 Cnot3-007 protein_coding Mus_musculus 0 538
ENSMUST00000144097 Cnot3-004 retained_intron Mus_musculus 0 538
ENSMUST00000019878 Leng1-001 protein_coding Mus_musculus 0 538
ENSDART00000137699 cnot3a-001 protein_coding Danio_rerio 0 442
ENSDART00000136697 cnot3b-001 protein_coding Danio_rerio 0 424
ENSDART00000081485 cnot3b-202 protein_coding Danio_rerio 0 416
ENSDART00000102100 cnot3a-201 protein_coding Danio_rerio 0 414

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