C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1 pseudogene 37
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000439613 HMGB1P37-001 ENSG00000213467 9606 - 9:121519816-121520424 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000439613
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000439613 0.021±0.00 0.045±0.00 0.022±0.00 0.062±0.00 0.041±0.00 0.061±0.00 0.509±0.00 0.046±0.00 0.241±0.00 0.059±0.00 0.091±0.07 0.019±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120421 Gm15387-001 processed_pseudogene Mus_musculus 0 689
ENSMUST00000178049 Gm21596-201 processed_pseudogene Mus_musculus 0 689
ENSMUST00000093196 Hmgb1-002 protein_coding Mus_musculus 0 689
ENSMUST00000110505 Hmgb1-003 protein_coding Mus_musculus 0 689
ENSMUST00000085546 Hmgb1-001 protein_coding Mus_musculus 0 689
ENSMUST00000084171 Gm5518-201 processed_pseudogene Mus_musculus 0 678
ENSMUST00000179479 Hmgb1-ps9-201 processed_pseudogene Mus_musculus 0 678
ENSMUST00000179821 RP24-388H6.4-001 processed_pseudogene Mus_musculus 0 675
ENSMUST00000173370 Hmgb1-ps7-001 processed_pseudogene Mus_musculus 0 673
ENSMUST00000119715 Gm5937-001 processed_pseudogene Mus_musculus 0 652
ENSMUST00000118415 Hmgb1-ps3-001 processed_pseudogene Mus_musculus 0 647
ENSMUST00000118281 Hmgb1-ps4-001 processed_pseudogene Mus_musculus 0 627
ENSMUST00000119503 Hmgb1-ps6-001 processed_pseudogene Mus_musculus 0 582
ENSMUST00000181542 Hmgb1-ps8-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000179326 Gm5473-201 processed_pseudogene Mus_musculus 0 562
ENSMUST00000121058 Hmgb1-ps5-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000120842 Gm8152-001 processed_pseudogene Mus_musculus 0 542
ENSMUST00000119126 Gm9078-001 processed_pseudogene Mus_musculus 0 542
ENSMUST00000117362 Gm12568-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000121222 Gm5396-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000180890 Gm26585-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000117107 Gm15560-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000162030 AC098736.2-001 processed_pseudogene Mus_musculus 0 503
ENSMUST00000121589 Gm11645-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000183926 Gm27254-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000118469 Gm15778-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000120015 Gm6461-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000190177 RP24-229N7.1-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000139443 Hmgb1-006 retained_intron Mus_musculus 0 464
ENSMUST00000117499 Gm12261-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000184467 Gm7870-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000121009 Gm14049-001 processed_pseudogene Mus_musculus 0 449
ENSMUST00000120970 Gm15750-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000119766 Gm12118-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000138553 Hmgb1-007 protein_coding Mus_musculus 0 366
ENSMUST00000189012 RP23-338I1.1-001 processed_pseudogene Mus_musculus 0 296
ENSMUST00000133667 Hmgb1-004 retained_intron Mus_musculus 0 289
ENSMUST00000186576 RP24-241N3.1-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000120168 Gm13902-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000125605 Hmgb1-008 protein_coding Mus_musculus 0 257
ENSMUST00000116383 Gm14448-001 processed_pseudogene Mus_musculus 8e-37 158

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