C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 15778
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118469 Gm15778-001 ENSMUSG00000081556 10090 - 6:148699029-148699636 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderKidneyOvaryPlacentaTestisENSMUST00000118469
Transcript ID Bladder Kidney Ovary Placenta Testis
ENSMUST00000118469 0.015±0.00 0.083±0.01 0.321±0.05 0.040±0.03 0.558±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000142811 hmgb2a-003 protein_coding Danio_rerio 1e-24 117
ENSDART00000137451 hmgb2a-004 protein_coding Danio_rerio 1e-24 117
ENSDART00000047159 hmgb2a-001 protein_coding Danio_rerio 1e-24 117
ENSDART00000114903 galnt7-201 protein_coding Danio_rerio 0.000000000000001 88
ENSDART00000142060 hmgb2a-002 retained_intron Danio_rerio 0.000000000000001 88
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 634
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 492
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 634
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 634
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 547
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 492
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 634
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 634
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 331
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 483
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 532
ENST00000505659 HMGB1P29-001 processed_pseudogene Homo_sapiens 0 211
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 3e-38 163
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 621
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 4e-32 141
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 527

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