C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cancer susceptibility candidate 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000346991 CASC5-002 ENSG00000137812 9606 + 15:40594020-40664342 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENST00000346991
Transcript ID Brain Ovary Placenta Testis
ENST00000346991 0.028±0.01 0.293±0.28 0.147±0.00 4.503±3.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070F CIL_00070F_0001 CGP 15:40569300-40664342

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000776 IEA kinetochore
GO:0001669 IDA acrosomal vesicle
GO:0001675 NAS acrosome assembly
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006334 TAS nucleosome assembly
GO:0007067 IEA mitotic nuclear division
GO:0008608 IDA attachment of spindle microtubules to kinetochore
GO:0010923 IDA negative regulation of phosphatase activity
GO:0034080 TAS CENP-A containing nucleosome assembly
GO:0034501 IDA protein localization to kinetochore
GO:0070062 IDA extracellular vesicular exosome
GO:0071173 IDA spindle assembly checkpoint

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099542 Casc5-201 protein_coding Mus_musculus 0 2002
ENSMUST00000028802 Casc5-004 protein_coding Mus_musculus 0 2002
ENSMUST00000028799 Casc5-001 protein_coding Mus_musculus 0 817
ENSMUST00000152380 Casc5-002 protein_coding Mus_musculus 0 699
ENSMUST00000153300 Casc5-003 protein_coding Mus_musculus 0 289
ENSMUST00000145380 Ckmt1-003 retained_intron Mus_musculus 0.00001 58
ENSMUST00000154581 Hp1bp3-011 retained_intron Mus_musculus 0.00005 57
ENSMUST00000167316 Zfp655-202 protein_coding Mus_musculus 0.0002 55

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