C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cancer susceptibility candidate 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028802 Casc5-004 ENSMUSG00000027326 10090 + 2:119057281-119105501 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028802
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028802 0.039±0.01 0.042±0.00 0.122±0.06 0.151±0.03 0.031±0.00 0.034±0.01 3.441±2.88 0.062±0.00 0.011±0.01 0.395±0.27 0.907±0.76 0.211±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070F CIL_00070F_0002 CGP 2:119034790-119105501

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001669 IEA acrosomal vesicle
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0008608 IEA attachment of spindle microtubules to kinetochore
GO:0010923 IEA negative regulation of phosphatase activity
GO:0034501 IEA protein localization to kinetochore
GO:0070062 IEA extracellular vesicular exosome
GO:0071173 IEA spindle assembly checkpoint

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000346991 CASC5-002 protein_coding Homo_sapiens 0 2002
ENST00000399668 CASC5-001 protein_coding Homo_sapiens 0 2002
ENST00000526913 CASC5-013 nonsense_mediated_decay Homo_sapiens 0 2002
ENST00000527044 CASC5-201 protein_coding Homo_sapiens 0 817
ENST00000528975 CASC5-005 protein_coding Homo_sapiens 5.99756e-43 178
ENST00000532056 CASC5-006 protein_coding Homo_sapiens 9e-28 126
ENST00000532347 CASC5-010 retained_intron Homo_sapiens 0 409
ENST00000532406 CASC5-008 protein_coding Homo_sapiens 0 193
ENST00000533001 CASC5-004 retained_intron Homo_sapiens 0 817
ENST00000534204 CASC5-007 nonsense_mediated_decay Homo_sapiens 8.99998e-41 171
ENST00000614337 CASC5-003 processed_transcript Homo_sapiens 0 959

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