C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cancer susceptibility candidate 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028799 Casc5-001 ENSMUSG00000027326 10090 + 2:119047150-119072919 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000028799
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000028799 0.014±0.00 0.153±0.08 0.066±0.03 0.076±0.00 0.008±0.00 0.021±0.01 0.014±0.00 0.055±0.00 0.368±0.08 0.027±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070F CIL_00070F_0002 CGP 2:119034790-119105501

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000776 IEA kinetochore
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0007059 IEA chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0010923 ISS negative regulation of phosphatase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000346991 CASC5-002 protein_coding Homo_sapiens 0 817
ENST00000399668 CASC5-001 protein_coding Homo_sapiens 0 817
ENST00000526913 CASC5-013 nonsense_mediated_decay Homo_sapiens 0.00000001 68
ENST00000527044 CASC5-201 protein_coding Homo_sapiens 0 817
ENST00000528975 CASC5-005 protein_coding Homo_sapiens 5.99756e-43 178
ENST00000532056 CASC5-006 protein_coding Homo_sapiens 9e-28 126
ENST00000533001 CASC5-004 retained_intron Homo_sapiens 0 817
ENST00000534204 CASC5-007 nonsense_mediated_decay Homo_sapiens 8.99998e-41 171
ENST00000614337 CASC5-003 processed_transcript Homo_sapiens 0 959

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