C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cholinergic receptor, nicotinic, delta (muscle)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000258385 CHRND-001 ENSG00000135902 9606 + 2:232526184-232535838 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleOvaryENST00000258385
Transcript ID Muscle Ovary
ENST00000258385 3.938±0.00 0.060±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HT CIL_0003HT_0001 CGP 2:232520463-232536667
CIL_0003HU CIL_0003HU_0001 CGP 2:232525993-232546403

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003009 IEA skeletal muscle contraction
GO:0004889 IEA acetylcholine-activated cation-selective channel activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0005892 IEA acetylcholine-gated channel complex
GO:0006810 TAS:IEA transport
GO:0006811 IEA ion transport
GO:0006812 TAS cation transport
GO:0006936 TAS muscle contraction
GO:0007165 TAS signal transduction
GO:0007268 TAS synaptic transmission
GO:0015276 IEA ligand-gated ion channel activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0042166 IEA acetylcholine binding
GO:0042391 IEA regulation of membrane potential
GO:0045211 NAS postsynaptic membrane
GO:0048630 IMP skeletal muscle tissue growth
GO:0050881 IMP musculoskeletal movement
GO:0050905 NAS neuromuscular process
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000073252 Chrnd-001 protein_coding Mus_musculus 0 1714
ENSMUST00000186373 Chrnd-002 protein_coding Mus_musculus 0 1683
ENSMUST00000189970 Chrnd-003 retained_intron Mus_musculus 0 196

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