C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cholinergic receptor, nicotinic, delta polypeptide
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000073252 Chrnd-001 ENSMUSG00000026251 10090 + 1:87190637-87200070 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000073252
Transcript ID Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000073252 0.079±0.00 0.163±0.02 0.012±0.00 0.007±0.00 0.034±0.06 0.191±0.03 0.845±0.23 0.189±0.08 0.003±0.00 0.027±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HT CIL_0003HT_0002 CGP 1:87183313-87200070
CIL_0003HU CIL_0003HU_0002 CGP 1:87190607-87212694

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003009 IEA skeletal muscle contraction
GO:0004889 IGI acetylcholine-activated cation-selective channel activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005892 IDA acetylcholine-gated channel complex
GO:0006812 IGI cation transport
GO:0015276 IEA ligand-gated ion channel activity
GO:0030054 IEA cell junction
GO:0042166 IGI acetylcholine binding
GO:0042391 IGI regulation of membrane potential
GO:0045211 IEA postsynaptic membrane
GO:0048630 IEA skeletal muscle tissue growth
GO:0050881 IEA musculoskeletal movement
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258385 CHRND-001 protein_coding Homo_sapiens 0 1714
ENST00000412233 CHRND-004 nonsense_mediated_decay Homo_sapiens 0 462
ENST00000441621 CHRND-002 nonsense_mediated_decay Homo_sapiens 0 1160
ENST00000446616 CHRND-005 nonsense_mediated_decay Homo_sapiens 0 1421
ENST00000449596 CHRND-003 protein_coding Homo_sapiens 0 327
ENST00000543200 CHRND-201 protein_coding Homo_sapiens 0 1524

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