C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172186 Srsf1-005 ENSMUSG00000018379 10090 + 11:88048589-88051122 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000172186
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000172186 144.207±0.00 379.824±0.00 310.035±183.09 228.710±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DL CIL_0009DL_0002 VISTA 11:87880548-88481652
CIL_0009DM CIL_0009DM_0002 VISTA 11:87974079-88576075
CIL_00039M CIL_00039M_0002 CGP 11:87979525-88053755

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258962 SRSF1-001 protein_coding Homo_sapiens 0 228
ENST00000578794 RP11-159D12.5-001 protein_coding Homo_sapiens 0 226
ENST00000581497 SRSF1-009 processed_transcript Homo_sapiens 0 226
ENST00000581979 SRSF1-004 nonsense_mediated_decay Homo_sapiens 0 492
ENST00000582730 SRSF1-003 protein_coding Homo_sapiens 0 270
ENST00000583741 SRSF1-005 nonsense_mediated_decay Homo_sapiens 0 228
ENST00000584668 SRSF1-008 nonsense_mediated_decay Homo_sapiens 0 490
ENST00000584773 SRSF1-002 protein_coding Homo_sapiens 0 224
ENST00000585096 SRSF1-006 protein_coding Homo_sapiens 0 224

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