C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene, 17296
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170518 Gm17296-201 ENSMUSG00000090290 10090 - 8:126426652-126475065 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000170518
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000170518 2.439±0.65 0.277±0.00 1.617±0.00 1.892±1.32 1.180±0.00 1.878±0.00 0.454±0.07 1.364±0.55 2.482±1.10 0.481±0.10 0.069±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X4 CIL_0007X4_0002 VISTA 8:126236388-126837692
CIL_0006KD CIL_0006KD_0002 CGP 8:126422501-126475065
CIL_0006KE CIL_0006KE_0002 CGP 8:126426652-126593986

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001510 IEA RNA methylation
GO:0003723 IEA RNA binding
GO:0006396 IEA RNA processing
GO:0008173 IEA RNA methyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000040877 TARBP1-001 protein_coding Homo_sapiens 0 2595
ENST00000462259 TARBP1-003 processed_transcript Homo_sapiens 3e-30 137
ENST00000463793 TARBP1-004 processed_transcript Homo_sapiens 0 337
ENST00000481183 TARBP1-006 processed_transcript Homo_sapiens 0 228
ENST00000483404 TARBP1-002 processed_transcript Homo_sapiens 5e-30 137

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