C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAR (HIV-1) RNA binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000483404 TARBP1-002 ENSG00000059588 9606 - 1:234391339-234407955 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainKidneyLiverLungOvaryTestisENST00000483404
Transcript ID Adrenal Brain Kidney Liver Lung Ovary Testis
ENST00000483404 2.008±0.00 0.962±0.00 0.339±0.15 0.216±0.00 1.003±0.30 2.171±0.75 2.678±2.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X4 CIL_0007X4_0001 VISTA 1:234243002-234844954
CIL_0006KD CIL_0006KD_0001 CGP 1:234373456-234479103
CIL_0006KE CIL_0006KE_0001 CGP 1:234391313-234609525

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170518 Gm17296-201 protein_coding Mus_musculus 5e-30 137
ENSMUST00000179332 5730455P16Rik-201 protein_coding Mus_musculus 0.0000000006 71
ENSMUST00000103225 5730455P16Rik-001 protein_coding Mus_musculus 0.0000000006 71
ENSMUST00000134437 Plin2-006 processed_transcript Mus_musculus 0.00000009 64

Loading