C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAR (HIV-1) RNA binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000040877 TARBP1-001 ENSG00000059588 9606 - 1:234391313-234479103 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000040877
Transcript ID Adipose Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000040877 0.710±0.00 0.473±0.00 1.978±0.00 1.604±0.00 0.725±0.54 0.971±0.26 0.333±0.00 0.884±0.25 0.911±0.00 3.637±3.50 2.318±0.54 2.368±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X4 CIL_0007X4_0001 VISTA 1:234243002-234844954
CIL_0006KD CIL_0006KD_0001 CGP 1:234373456-234479103
CIL_0006KE CIL_0006KE_0001 CGP 1:234391313-234609525

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001510 IEA RNA methylation
GO:0003723 IEA RNA binding
GO:0005488 IEA binding
GO:0005634 TAS nucleus
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006396 IEA RNA processing
GO:0008173 IEA RNA methyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170518 Gm17296-201 protein_coding Mus_musculus 0 2595

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