C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: wingless-type MMTV integration site family, member 5b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000122986 wnt5b-202 ENSDARG00000034894 7955 - 4:7494287-7520834 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000122986
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000122986 0.772±0.11 3.119±0.43 2.818±0.15 0.156±0.00 0.150±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006C2 CIL_0006C2_0001 CGP 4:7451258-7627025
CIL_0003XK CIL_0003XK_0001 CGP 4:7494280-7627025

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0001525 IMP angiogenesis
GO:0001667 IMP ameboidal cell migration
GO:0002062 IMP chondrocyte differentiation
GO:0002574 IMP thrombocyte differentiation
GO:0005102 IEA receptor binding
GO:0005109 IBA frizzled binding
GO:0005576 IEA extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IBA extracellular space
GO:0005622 IDA intracellular
GO:0007223 IDA Wnt receptor signaling pathway, calcium modulating pathway
GO:0007275 IEA multicellular organismal development
GO:0008591 IMP regulation of Wnt receptor signaling pathway, calcium modulating pathway
GO:0009826 IMP unidimensional cell growth
GO:0010172 IMP embryonic body morphogenesis
GO:0016055 IEA Wnt receptor signaling pathway
GO:0030182 IBA neuron differentiation
GO:0031018 IMP endocrine pancreas development
GO:0031101 IMP fin regeneration
GO:0042074 IMP cell migration involved in gastrulation
GO:0045165 IBA cell fate commitment
GO:0048840 IMP otolith development
GO:0048884 IMP neuromast development
GO:0051209 IDA release of sequestered calcium ion into cytosol
GO:0060026 IGI convergent extension
GO:0060027 IMP convergent extension involved in gastrulation
GO:0060028 IGI convergent extension involved in axis elongation
GO:0060030 IMP dorsal convergence
GO:0061053 IGI somite development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264634 WNT5A-201 protein_coding Homo_sapiens 0 676
ENST00000285018 WNT7A-001 protein_coding Homo_sapiens 0.000000003 69
ENST00000310594 WNT5B-005 protein_coding Homo_sapiens 0 619
ENST00000397196 WNT5B-001 protein_coding Homo_sapiens 0 619
ENST00000474267 WNT5A-001 protein_coding Homo_sapiens 0 676
ENST00000497027 WNT5A-005 protein_coding Homo_sapiens 0 676
ENST00000537031 WNT5B-007 protein_coding Homo_sapiens 0 619
ENST00000545747 WNT5B-010 processed_transcript Homo_sapiens 0 291
ENST00000614415 WNT5A-202 protein_coding Homo_sapiens 0 200

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