C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: wingless-type MMTV integration site family, member 5B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397196 WNT5B-001 ENSG00000111186 9606 + 12:1629197-1647243 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonLiverOvaryPlacentaENST00000397196
Transcript ID Colon Liver Ovary Placenta
ENST00000397196 2.171±0.00 0.166±0.00 4.468±0.00 2.524±1.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XK CIL_0003XK_0002 CGP 12:1529891-1647243

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002062 IEP chondrocyte differentiation
GO:0005102 IEA:IPI receptor binding
GO:0005109 IBA frizzled binding
GO:0005576 TAS:IEA extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 NAS extracellular space
GO:0005788 TAS endoplasmic reticulum lumen
GO:0005796 TAS Golgi lumen
GO:0005886 TAS plasma membrane
GO:0007275 IEA multicellular organismal development
GO:0009986 IEA cell surface
GO:0016055 IEA:IMP Wnt signaling pathway
GO:0030182 ISS neuron differentiation
GO:0030335 IDA positive regulation of cell migration
GO:0031012 IEA extracellular matrix
GO:0042060 IEA wound healing
GO:0045165 IBA cell fate commitment
GO:0045444 NAS fat cell differentiation
GO:0045600 IEA positive regulation of fat cell differentiation
GO:0070062 IDA extracellular vesicular exosome
GO:0070307 ISS lens fiber cell development
GO:0071300 ISS cellular response to retinoic acid
GO:0090090 IEA negative regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118120 Wnt5b-003 protein_coding Mus_musculus 0 1367
ENSMUST00000178696 Wnt5b-201 protein_coding Mus_musculus 0 1365
ENSMUST00000119369 Wnt5b-001 protein_coding Mus_musculus 0 1365
ENSMUST00000117171 Wnt5b-002 protein_coding Mus_musculus 0 1365
ENSDART00000122986 wnt5b-202 protein_coding Danio_rerio 0 619
ENSDART00000041852 wnt5b-201 protein_coding Danio_rerio 0 619
ENSDART00000074651 wnt5b-003 protein_coding Danio_rerio 0 619
ENSDART00000123877 wnt5a-202 protein_coding Danio_rerio 0 459
ENSDART00000023675 wnt5a-201 protein_coding Danio_rerio 0 459

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