C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: C-type lectin domain family 5, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000546910 CLEC5A-001 ENSG00000258227 9606 - 7:141927357-141946983 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLungOvaryPlacentaENST00000546910
Transcript ID Brain Kidney Lung Ovary Placenta
ENST00000546910 0.036±0.00 0.435±0.00 0.379±0.06 0.364±0.10 0.243±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003A2 CIL_0003A2_0001 CGP 7:141918817-141947007
CIL_0003A5 CIL_0003A5_0001 CGP 7:141927357-141973773

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001618 IDA virus receptor activity
GO:0002076 ISS osteoblast development
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006968 TAS cellular defense response
GO:0007165 TAS signal transduction
GO:0009615 IDA response to virus
GO:0009986 ISS cell surface
GO:0016032 IEA viral process
GO:0030099 IEA myeloid cell differentiation
GO:0030246 IEA carbohydrate binding
GO:0033033 IEA negative regulation of myeloid cell apoptotic process
GO:0043066 ISS negative regulation of apoptotic process
GO:0045087 IDA innate immune response
GO:0050715 IEA positive regulation of cytokine secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000129948 Clec5a-001 protein_coding Mus_musculus 0 431
ENSMUST00000101491 Clec5a-002 protein_coding Mus_musculus 0 344
ENSMUST00000177178 Clec5a-004 protein_coding Mus_musculus 0 324
ENSMUST00000031975 Clec5a-003 processed_transcript Mus_musculus 0 206

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