C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: C-type lectin domain family 5, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000258227 CLEC5A 9606 - 7:141927357-141947007 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000418498 CLEC5A-002 141929131-141947007 nonsense_mediated_decay
  ENST00000438351 CLEC5A-006 141931507-141946933 protein_coding
  ENST00000439991 CLEC5A-004 141930015-141946936 protein_coding
  ENST00000470595 CLEC5A-005 141931508-141946887 processed_transcript
  ENST00000481301 CLEC5A-007 141931767-141936331 retained_intron
  ENST00000546910 CLEC5A-001 141927357-141946983 protein_coding
  ENST00000551012 CLEC5A-003 141929340-141946944 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLiverLungOvaryPlacentaENST00000438351ENST00000546910ENST00000551012
Transcript ID Brain Colon Kidney Liver Lung Ovary Placenta
ENST00000438351 N/A 0.274±0.00 N/A N/A N/A N/A N/A
ENST00000546910 0.036±0.00 N/A 0.435±0.00 N/A 0.379±0.06 0.364±0.10 0.243±0.08
ENST00000551012 N/A N/A N/A 0.136±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003A2 CIL_0003A2_0001 CGP 7:141918817-141947007
CIL_0003A5 CIL_0003A5_0001 CGP 7:141927357-141973773

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001618 IDA virus receptor activity
GO:0002076 ISS osteoblast development
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006968 TAS cellular defense response
GO:0007165 TAS signal transduction
GO:0009615 IDA response to virus
GO:0009986 ISS cell surface
GO:0016032 IEA viral process
GO:0030099 IEA myeloid cell differentiation
GO:0030246 IEA carbohydrate binding
GO:0033033 IEA negative regulation of myeloid cell apoptotic process
GO:0043066 ISS negative regulation of apoptotic process
GO:0045087 IDA innate immune response
GO:0050715 IEA positive regulation of cytokine secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000029915 Clec5a C-type lectin domain family 5, member a protein_coding Mus_musculus

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