C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: BRCA1/BRCA2-containing complex, subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000453705 BRCC3-005 ENSG00000185515 9606 + X:155071532-155123036 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonLungMuscleOvaryPlacentaTestisENST00000453705
Transcript ID Adipose Brain Colon Lung Muscle Ovary Placenta Testis
ENST00000453705 1.677±0.00 0.498±0.00 0.960±0.00 0.496±0.00 0.872±0.07 1.573±0.29 2.587±0.28 0.328±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GE CIL_0007GE_0002 CGP X:155061622-155123074
CIL_0003LJ CIL_0003LJ_0001 CGP X:155071420-155239817

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033544 Brcc3-001 protein_coding Mus_musculus 0 1223
ENSMUST00000114074 Brcc3-004 protein_coding Mus_musculus 0 1164
ENSMUST00000151938 Brcc3-003 retained_intron Mus_musculus 0 1035
ENSMUST00000124321 Brcc3-005 retained_intron Mus_musculus 0 869
ENSMUST00000117333 Gm12598-001 processed_pseudogene Mus_musculus 0 723
ENSMUST00000118428 Brcc3-008 protein_coding Mus_musculus 0 713
ENSMUST00000133781 Brcc3-007 protein_coding Mus_musculus 0 520
ENSMUST00000152228 Brcc3-006 protein_coding Mus_musculus 0 243

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