C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Alstrom syndrome 1 pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000450720 ALMS1P-002 ENSG00000163016 9606 + 2:73644919-73685576 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryTestisENST00000450720
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENST00000450720 0.036±0.00 0.316±0.00 0.096±0.04 0.018±0.00 0.126±0.00 0.036±0.02 0.068±0.00 0.049±0.00 0.221±0.00 0.235±0.18 1.525±0.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003O2 CIL_0003O2_0001 CGP 2:73640832-73737400

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000159498 Alms1-ps1-001 unprocessed_pseudogene Mus_musculus 0 366
ENSMUST00000072018 Alms1-001 protein_coding Mus_musculus 0 366
ENSMUST00000160606 Alms1-ps2-002 processed_transcript Mus_musculus 4e-19 100
ENSMUST00000161983 Alms1-ps2-001 transcribed_unprocessed_pseudogene Mus_musculus 4e-19 100

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