C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adaptor-related protein complex 1, sigma 3 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000443700 AP1S3-001 ENSG00000152056 9606 - 2:223751686-223837602 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000443700
Transcript ID Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000443700 0.427±0.00 0.033±0.00 0.119±0.01 0.015±0.00 1.158±0.00 0.107±0.07 0.311±0.08 0.156±0.10 0.187±0.00 0.446±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AM CIL_0004AM_0003 CGP 2:223596940-223838027
CIL_0006XJ CIL_0006XJ_0001 CGP 2:223751686-223945387

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005765 TAS lysosomal membrane
GO:0005829 TAS cytosol
GO:0005905 IEA coated pit
GO:0006810 IEA transport
GO:0006886 IEA intracellular protein transport
GO:0006892 TAS post-Golgi vesicle-mediated transport
GO:0008565 IEA protein transporter activity
GO:0015031 IEA protein transport
GO:0016032 TAS viral process
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0030117 IEA membrane coat
GO:0030659 TAS cytoplasmic vesicle membrane
GO:0032588 TAS trans-Golgi network membrane
GO:0050690 TAS regulation of defense response to virus by virus
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162342 Ap1s3-001 protein_coding Mus_musculus 0 571
ENSMUST00000159312 Ap1s3-002 nonsense_mediated_decay Mus_musculus 0 553
ENSMUST00000179174 Gm8532-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000121079 Gm15786-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000160706 Ap1s3-003 nonsense_mediated_decay Mus_musculus 0 204

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