C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stromal antigen 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371157 STAG2-001 ENSG00000101972 9606 + X:123961718-124102656 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000371157
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000371157 4.048±0.00 2.331±0.00 2.813±0.36 3.648±0.00 5.341±1.41 1.584±0.00 4.980±1.09 5.829±0.00 6.634±3.20 9.667±0.49 1.853±1.07 2.132±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GB CIL_0000GB_0002 CGP X:123859724-124422664
CIL_0007YQ CIL_0007YQ_0001 VISTA X:123916977-124518737
CIL_0000AX CIL_0000AX_0001 CGP X:123960212-124422664

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000775 TAS chromosome, centromeric region
GO:0000785 IDA chromatin
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005694 TAS chromosome
GO:0005730 IDA nucleolus
GO:0005829 TAS cytosol
GO:0005886 IDA plasma membrane
GO:0007062 IMP sister chromatid cohesion
GO:0007067 IEA mitotic nuclear division
GO:0015629 IDA actin cytoskeleton
GO:0016020 IDA membrane
GO:0032876 IMP negative regulation of DNA endoreduplication
GO:0045111 IDA intermediate filament cytoskeleton
GO:0051321 IEA meiotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000069619 Stag2-001 protein_coding Mus_musculus 0 8669
ENSMUST00000115072 Stag2-201 protein_coding Mus_musculus 0 8488
ENSMUST00000115073 Stag2-002 protein_coding Mus_musculus 0 5312
ENSMUST00000128799 Stag2-005 protein_coding Mus_musculus 0 741
ENSMUST00000141414 Stag2-004 processed_transcript Mus_musculus 0 544
ENSMUST00000136323 Stag2-003 retained_intron Mus_musculus 0 544
ENSMUST00000123245 Stag2-007 protein_coding Mus_musculus 0 289
ENSMUST00000127618 Stag2-006 protein_coding Mus_musculus 0 283

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