C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stromal antigen 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115073 Stag2-002 ENSMUSG00000025862 10090 + X:42149317-42277185 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonLiverMuscleOvaryPlacentaTestisENSMUST00000115073
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Liver Muscle Ovary Placenta Testis
ENSMUST00000115073 0.861±0.00 0.749±0.00 2.404±0.79 3.727±0.11 1.331±0.00 0.833±0.00 4.019±1.12 1.625±0.26 2.007±1.16 1.781±0.00 1.038±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YQ CIL_0007YQ_0002 VISTA X:42042580-42644283
CIL_0000GB CIL_0000GB_0003 CGP X:42059679-42277185
CIL_0000AX CIL_0000AX_0002 CGP X:42149317-42529330

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IDA chromatin
GO:0003682 IDA chromatin binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005886 IEA plasma membrane
GO:0007062 IEA sister chromatid cohesion
GO:0015629 IEA actin cytoskeleton
GO:0016020 IEA membrane
GO:0019827 IMP stem cell maintenance
GO:0032876 IEA negative regulation of DNA endoreduplication
GO:0045111 IEA intermediate filament cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000218089 STAG2-006 protein_coding Homo_sapiens 0 7180
ENST00000371144 STAG2-008 protein_coding Homo_sapiens 0 5312
ENST00000371145 STAG2-019 protein_coding Homo_sapiens 0 6324
ENST00000371157 STAG2-001 protein_coding Homo_sapiens 0 5312
ENST00000371160 STAG2-018 protein_coding Homo_sapiens 0 5312
ENST00000394477 STAG2-020 protein_coding Homo_sapiens 0 424
ENST00000394478 STAG2-017 protein_coding Homo_sapiens 0 614
ENST00000428941 STAG2-014 protein_coding Homo_sapiens 0 843
ENST00000435103 STAG2-011 protein_coding Homo_sapiens 0 771
ENST00000435215 STAG2-013 protein_coding Homo_sapiens 0 1002
ENST00000455404 STAG2-002 protein_coding Homo_sapiens 0 2889
ENST00000458176 STAG2-005 nonsense_mediated_decay Homo_sapiens 0 555
ENST00000458700 STAG2-007 protein_coding Homo_sapiens 0 283
ENST00000466748 STAG2-012 processed_transcript Homo_sapiens 0 1138
ENST00000469481 STAG2-010 processed_transcript Homo_sapiens 0 254
ENST00000471107 STAG2-015 processed_transcript Homo_sapiens 0 911
ENST00000475602 STAG2-016 processed_transcript Homo_sapiens 0 339
ENST00000483575 STAG2-009 processed_transcript Homo_sapiens 0 773

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