C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, L type, alpha 1S subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000362061 CACNA1S-001 ENSG00000081248 9606 - 1:201039514-201112566 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastMuscleOvaryENST00000362061
Transcript ID Brain Breast Muscle Ovary
ENST00000362061 0.163±0.09 4.431±0.00 42.320±6.60 0.001±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IEA skeletal system development
GO:0002074 IEA extraocular skeletal muscle development
GO:0005216 IEA ion channel activity
GO:0005245 IDA voltage-gated calcium channel activity
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005891 IDA voltage-gated calcium channel complex
GO:0006811 IEA ion transport
GO:0006816 IDA calcium ion transport
GO:0006936 IMP muscle contraction
GO:0006941 IEA striated muscle contraction
GO:0007029 IEA endoplasmic reticulum organization
GO:0007411 TAS axon guidance
GO:0007519 IEA skeletal muscle tissue development
GO:0007520 IEA myoblast fusion
GO:0007528 IEA neuromuscular junction development
GO:0008331 IDA high voltage-gated calcium channel activity
GO:0016020 IEA membrane
GO:0016529 IEA sarcoplasmic reticulum
GO:0030315 IDA T-tubule
GO:0031674 IDA I band
GO:0034765 IEA regulation of ion transmembrane transport
GO:0043501 IEA skeletal muscle adaptation
GO:0046872 IEA metal ion binding
GO:0048741 IEA skeletal muscle fiber development
GO:0055001 IEA muscle cell development
GO:0055085 IEA transmembrane transport
GO:0070509 IBA calcium ion import
GO:0070588 IEA calcium ion transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160641 Cacna1s-002 protein_coding Mus_musculus 0 6772
ENSMUST00000112064 Cacna1s-201 protein_coding Mus_musculus 0 6505
ENSMUST00000112068 Cacna1s-001 protein_coding Mus_musculus 0 4604
ENSMUST00000161865 Cacna1s-003 protein_coding Mus_musculus 0 3611
ENSDART00000105895 cacna1sa-001 protein_coding Danio_rerio 0 1330
ENSMUST00000161700 Cacna1s-004 retained_intron Mus_musculus 0 1002
ENSMUST00000190285 Cacna1c-007 protein_coding Mus_musculus 0 776
ENSMUST00000188106 Cacna1c-011 protein_coding Mus_musculus 0 776
ENSMUST00000189520 Cacna1c-017 protein_coding Mus_musculus 0 776
ENSMUST00000189389 Cacna1c-016 protein_coding Mus_musculus 0 776
ENSMUST00000188078 Cacna1c-015 protein_coding Mus_musculus 0 776
ENSMUST00000187474 Cacna1c-008 protein_coding Mus_musculus 0 776
ENSMUST00000075591 Cacna1c-024 protein_coding Mus_musculus 0 776
ENSMUST00000078320 Cacna1c-004 protein_coding Mus_musculus 0 776
ENSMUST00000186889 Cacna1c-001 protein_coding Mus_musculus 0 776
ENSMUST00000112825 Cacna1c-201 protein_coding Mus_musculus 0 741
ENSMUST00000112793 Cacna1c-010 protein_coding Mus_musculus 0 741
ENSMUST00000187386 Cacna1c-006 protein_coding Mus_musculus 0 741
ENSMUST00000188865 Cacna1c-020 protein_coding Mus_musculus 0 741
ENSMUST00000185345 Cacna1c-019 protein_coding Mus_musculus 0 741
ENSMUST00000187317 Cacna1c-018 protein_coding Mus_musculus 0 741
ENSMUST00000188522 Cacna1c-014 protein_coding Mus_musculus 0 741
ENSMUST00000187940 Cacna1c-002 protein_coding Mus_musculus 0 741
ENSMUST00000112790 Cacna1c-005 protein_coding Mus_musculus 0 741
ENSMUST00000188181 Cacna1c-012 processed_transcript Mus_musculus 0 741
ENSMUST00000112250 Cacna1d-202 protein_coding Mus_musculus 0 688
ENSMUST00000112249 Cacna1d-201 protein_coding Mus_musculus 0 688
ENSDART00000089956 cacna1da-201 protein_coding Danio_rerio 0 658
ENSDART00000100118 cacna1da-202 protein_coding Danio_rerio 0 658
ENSDART00000058276 cacna1da-001 protein_coding Danio_rerio 0 658
ENSMUST00000141634 Cacna1f-004 retained_intron Mus_musculus 0 440
ENSMUST00000115725 Cacna1f-002 protein_coding Mus_musculus 0 440
ENSMUST00000115726 Cacna1f-001 protein_coding Mus_musculus 0 440
ENSMUST00000155090 Cacna1f-003 nonsense_mediated_decay Mus_musculus 0 440
ENSMUST00000159106 Cacna1s-005 processed_transcript Mus_musculus 0 311
ENSDART00000011078 CACNA1F (1 of 2)-201 protein_coding Danio_rerio 0 281
ENSDART00000041564 cacna1f-201 protein_coding Danio_rerio 0 206
ENSDART00000134151 cacna1f-001 protein_coding Danio_rerio 6.00036e-42 178

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