C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: beclin 1, autophagy related
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361523 BECN1-002 ENSG00000126581 9606 - 17:42810134-42824263 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000361523
Transcript ID Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000361523 10.006±0.00 6.483±0.00 12.244±0.00 6.396±0.00 7.875±0.00 19.037±0.00 11.434±0.00 7.926±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SB CIL_0005SB_0001 CGP 17:42795147-42811587
CIL_0005S8 CIL_0005S8_0001 CGP 17:42798792-42833350
CIL_0005S9 CIL_0005S9_0001 CGP 17:42810134-42843758

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 IEA autophagic vacuole assembly
GO:0000910 IMP cytokinesis
GO:0001666 IEA response to hypoxia
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005802 IEA trans-Golgi network
GO:0006914 IEA autophagy
GO:0006968 TAS cellular defense response
GO:0007040 IEA lysosome organization
GO:0008285 IEA negative regulation of cell proliferation
GO:0016020 IEA membrane
GO:0016023 IEA cytoplasmic membrane-bounded vesicle
GO:0016032 IEA viral process
GO:0016239 IEA positive regulation of macroautophagy
GO:0030425 IEA dendrite
GO:0033197 IEA response to vitamin E
GO:0042493 IEA response to drug
GO:0043066 TAS negative regulation of apoptotic process
GO:0043234 IEA protein complex
GO:0043565 IEA sequence-specific DNA binding
GO:0045335 IEA phagocytic vesicle
GO:0048666 IEA neuron development
GO:0050435 IEA beta-amyloid metabolic process
GO:0050790 IEA regulation of catalytic activity
GO:0051607 IEA defense response to virus
GO:0051707 IEA response to other organism
GO:0060548 IEA negative regulation of cell death
GO:0071275 IEA cellular response to aluminum ion
GO:0071364 IEA cellular response to epidermal growth factor stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000130916 Becn1-001 protein_coding Mus_musculus 0 2143
ENSMUST00000122817 Becn1-003 retained_intron Mus_musculus 0 1725
ENSMUST00000041403 Becn1-002 nonsense_mediated_decay Mus_musculus 0 1705
ENSMUST00000167667 Becn1-014 nonsense_mediated_decay Mus_musculus 0 1491
ENSMUST00000139997 Becn1-004 retained_intron Mus_musculus 0 1133
ENSMUST00000167818 Becn1-017 nonsense_mediated_decay Mus_musculus 0 870
ENSMUST00000126195 Becn1-011 nonsense_mediated_decay Mus_musculus 0 843
ENSMUST00000172233 Becn1-015 protein_coding Mus_musculus 0 688
ENSMUST00000140286 Becn1-010 retained_intron Mus_musculus 0 606
ENSMUST00000140706 Becn1-005 protein_coding Mus_musculus 0 510
ENSMUST00000170502 Becn1-013 protein_coding Mus_musculus 0 425
ENSMUST00000136535 Becn1-008 retained_intron Mus_musculus 0 370
ENSMUST00000139669 Becn1-006 processed_transcript Mus_musculus 0 335
ENSMUST00000137614 Becn1-009 retained_intron Mus_musculus 0 213
ENSMUST00000164036 Becn1-016 retained_intron Mus_musculus 0 213
ENSMUST00000103107 Cntd1-001 protein_coding Mus_musculus 5e-39 167
ENSMUST00000129863 Becn1-012 protein_coding Mus_musculus 0.000000005 68

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