C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter), member 10, pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000330048 SLC6A10P-002 ENSG00000214617 9606 - 16:32877469-32885142 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000330048
Transcript ID Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000330048 0.089±0.00 0.008±0.00 0.013±0.00 0.038±0.00 0.120±0.00 0.033±0.00 0.091±0.07 0.018±0.00 0.059±0.02 5.336±3.52

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033752 Slc6a8-001 protein_coding Mus_musculus 0 675
ENSMUST00000168831 Slc6a8-003 protein_coding Mus_musculus 0 673
ENSMUST00000114467 Slc6a8-201 protein_coding Mus_musculus 0 671
ENSMUST00000114464 Slc6a8-004 nonsense_mediated_decay Mus_musculus 0 671
ENSMUST00000114465 Slc6a8-002 protein_coding Mus_musculus 0 671
ENSMUST00000164449 Slc6a8-006 protein_coding Mus_musculus 0 671
ENSMUST00000170614 Slc6a8-009 retained_intron Mus_musculus 0 654
ENSMUST00000171398 Slc6a8-012 protein_coding Mus_musculus 0 422
ENSMUST00000146796 Slc6a8-011 retained_intron Mus_musculus 0 396
ENSMUST00000168764 Slc6a8-013 retained_intron Mus_musculus 0 333
ENSMUST00000166200 Slc6a8-010 processed_transcript Mus_musculus 0 309
ENSMUST00000167828 Slc6a8-014 retained_intron Mus_musculus 2e-40 172
ENSMUST00000170574 Slc6a8-015 retained_intron Mus_musculus 2e-40 172
ENSDART00000149136 si:ch211-117c9.5-002 protein_coding Danio_rerio 1e-21 110
ENSDART00000092131 si:ch211-117c9.5-001 protein_coding Danio_rerio 1e-21 110

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