C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein kinase C, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000321728 PRKCB-001 ENSG00000166501 9606 + 16:23836001-24220611 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartLiverLungMuscleOvaryPlacentaTestisENST00000321728
Transcript ID Adipose Brain Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000321728 0.525±0.00 20.012±1.15 0.376±0.00 0.328±0.00 2.977±0.53 0.083±0.01 0.372±0.03 0.742±0.13 2.985±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CY CIL_0006CY_0001 CGP 16:23754627-24220611
CIL_0003VA CIL_0003VA_0002 CGP 16:23836001-24362801

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0004672 IEA protein kinase activity
GO:0004674 TAS:IEA protein serine/threonine kinase activity
GO:0004697 IEA protein kinase C activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005080 IPI protein kinase C binding
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005886 IDA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IMP regulation of transcription from RNA polymerase II promoter
GO:0006468 TAS:IEA protein phosphorylation
GO:0006915 IEA apoptotic process
GO:0007165 NAS signal transduction
GO:0007268 TAS synaptic transmission
GO:0007596 TAS blood coagulation
GO:0008270 IEA zinc ion binding
GO:0010829 ISS negative regulation of glucose transport
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0030168 TAS platelet activation
GO:0030374 IMP ligand-dependent nuclear receptor transcription coactivator activity
GO:0030949 ISS positive regulation of vascular endothelial growth factor receptor signaling pathway
GO:0035403 IDA histone kinase activity (H3-T6 specific)
GO:0035408 IDA histone H3-T6 phosphorylation
GO:0035556 IEA intracellular signal transduction
GO:0042113 ISS B cell activation
GO:0042393 IDA histone binding
GO:0042953 TAS lipoprotein transport
GO:0043123 ISS positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045766 ISS positive regulation of angiogenesis
GO:0046627 ISS negative regulation of insulin receptor signaling pathway
GO:0050681 IDA androgen receptor binding
GO:0050853 ISS B cell receptor signaling pathway
GO:0050861 ISS positive regulation of B cell receptor signaling pathway
GO:0051092 ISS positive regulation of NF-kappaB transcription factor activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000064921 Prkcb-003 protein_coding Mus_musculus 0 3332
ENSMUST00000143692 Prkcb-002 nonsense_mediated_decay Mus_musculus 0 2654
ENSMUST00000064989 Prkcb-001 protein_coding Mus_musculus 0 2543
ENSDART00000029451 prkcbb-001 protein_coding Danio_rerio 0 1206
ENSMUST00000059595 Prkca-001 protein_coding Mus_musculus 0 952
ENSDART00000006211 prkcba-001 protein_coding Danio_rerio 0 946
ENSDART00000086619 prkca-001 protein_coding Danio_rerio 0 497
ENSDART00000137211 prkcba-002 protein_coding Danio_rerio 0 322
ENSDART00000142610 prkcg-001 protein_coding Danio_rerio 0 267
ENSMUST00000134725 Prkca-002 processed_transcript Mus_musculus 0 254
ENSMUST00000149583 Prkcb-005 processed_transcript Mus_musculus 0 235
ENSMUST00000131167 Prkcb-004 processed_transcript Mus_musculus 5e-30 137
ENSMUST00000133383 Apoh-002 protein_coding Mus_musculus 0.000004 58

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