C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein kinase C, beta b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000029451 prkcbb-001 ENSDARG00000022254 7955 + 3:35091026-35335821 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000029451
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000029451 28.561±15.73 2.194±0.46 11.099±2.57 0.099±0.00 1.834±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VA CIL_0003VA_0001 CGP 3:35091026-35461274

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003682 ISS chromatin binding
GO:0004672 IEA protein kinase activity
GO:0004674 IEA protein serine/threonine kinase activity
GO:0004697 IEA protein kinase C activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0006357 ISS regulation of transcription from RNA polymerase II promoter
GO:0006468 IEA protein phosphorylation
GO:0006915 IEA apoptotic process
GO:0008270 IEA zinc ion binding
GO:0016020 IEA membrane
GO:0016301 IEA kinase activity
GO:0016310 IEA phosphorylation
GO:0016568 IEA chromatin modification
GO:0016740 IEA transferase activity
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0030374 ISS ligand-dependent nuclear receptor transcription coactivator activity
GO:0035162 IMP embryonic hemopoiesis
GO:0035403 ISS histone kinase activity (H3-T6 specific)
GO:0035408 ISS histone H3-T6 phosphorylation
GO:0035556 IEA intracellular signal transduction
GO:0042113 ISS B cell activation
GO:0042393 ISS histone binding
GO:0043123 ISS positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0046872 IEA metal ion binding
GO:0050681 ISS androgen receptor binding
GO:0050853 ISS B cell receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000059595 Prkca-001 protein_coding Mus_musculus 0 1027
ENSMUST00000064921 Prkcb-003 protein_coding Mus_musculus 0 1334
ENSMUST00000064989 Prkcb-001 protein_coding Mus_musculus 0 1428
ENSMUST00000134910 Prkca-003 processed_transcript Mus_musculus 0 361
ENSMUST00000143692 Prkcb-002 nonsense_mediated_decay Mus_musculus 0 1428
ENST00000303531 PRKCB-002 protein_coding Homo_sapiens 0 1306
ENST00000321728 PRKCB-001 protein_coding Homo_sapiens 0 1206
ENST00000466124 PRKCB-010 protein_coding Homo_sapiens 4e-29 132

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