C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CUB and Sushi multiple domains 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000297405 CSMD3-001 ENSG00000164796 9606 - 8:112222928-113437099 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryTestisENST00000297405
Transcript ID Brain Ovary Testis
ENST00000297405 0.321±0.00 0.010±0.00 0.149±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RS CIL_0005RS_0001 CGP 8:109963645-113437099
CIL_0005RP CIL_0005RP_0001 CGP 8:112222928-115809673

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 IEA plasma membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162830 Csmd3-001 protein_coding Mus_musculus 0 15950
ENSMUST00000100670 Csmd3-201 protein_coding Mus_musculus 0 15820
ENSMUST00000160658 Csmd3-004 protein_coding Mus_musculus 0 9053
ENSMUST00000161653 Csmd3-005 protein_coding Mus_musculus 0 7914
ENSMUST00000160716 Csmd3-003 processed_transcript Mus_musculus 0 2514
ENSMUST00000162006 Csmd3-007 retained_intron Mus_musculus 0 2222
ENSDART00000108507 CR352286.1-201 protein_coding Danio_rerio 0 1899
ENSMUST00000160655 Csmd3-002 retained_intron Mus_musculus 0 1633
ENSDART00000006458 protein_coding Danio_rerio 0 1138
ENSDART00000148564 protein_coding Danio_rerio 0 1123
ENSMUST00000110261 Csmd3-006 retained_intron Mus_musculus 0 662
ENSMUST00000082104 Csmd1-001 protein_coding Mus_musculus 0 309
ENSMUST00000131778 Csmd1-003 processed_transcript Mus_musculus 0 309

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