C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: complement component 1, r subcomponent B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000184647 C1rb-001 ENSMUSG00000098470 10090 + 6:124570294-124581171 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartLiverMuscleOvaryPlacentaTestisENSMUST00000184647
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000184647 0.028±0.00 0.169±0.05 0.036±0.00 0.020±0.00 0.057±0.03 0.010±0.00 0.210±0.49 0.072±0.00 0.136±0.08 0.027±0.03 0.045±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001H CIL_00001H_0002 CGP 6:124530345-124581171

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004252 IEA serine-type endopeptidase activity
GO:0005509 IEA calcium ion binding
GO:0005576 IEA extracellular region
GO:0006508 IEA proteolysis
GO:0006958 IEA complement activation, classical pathway
GO:0045087 IEA innate immune response

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000535233 C1R-003 protein_coding Homo_sapiens 0 1659
ENST00000536053 C1R-004 protein_coding Homo_sapiens 0 1982
ENST00000538050 C1R-013 protein_coding Homo_sapiens 0 512
ENST00000539803 C1RL-009 nonsense_mediated_decay Homo_sapiens 0 654
ENST00000540242 C1R-009 protein_coding Homo_sapiens 0 512
ENST00000540394 C1R-002 retained_intron Homo_sapiens 0 1129
ENST00000540610 C1R-006 protein_coding Homo_sapiens 0 453
ENST00000541042 C1R-007 protein_coding Homo_sapiens 0 575
ENST00000542285 C1R-001 protein_coding Homo_sapiens 0 2061
ENST00000543362 C1R-012 nonsense_mediated_decay Homo_sapiens 0 505
ENST00000543835 C1R-011 protein_coding Homo_sapiens 0 305
ENST00000543851 C1R-014 retained_intron Homo_sapiens 0 279
ENST00000545466 C1R-010 retained_intron Homo_sapiens 0 512
ENST00000602298 C1R-015 retained_intron Homo_sapiens 0 806

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