C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000183352 SRSF1-201 ENSMUSG00000098301 10090 + MG3829_PATCH:88047381-88053757 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000395 ISS mRNA 5'-splice site recognition
GO:0001701 IMP in utero embryonic development
GO:0003723 ISS RNA binding
GO:0003729 ISO mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 ISS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006417 IEA regulation of translation
GO:0008380 IGI RNA splicing
GO:0016607 IDA nuclear speck
GO:0043488 IEA regulation of mRNA stability
GO:0048024 IEA regulation of mRNA splicing, via spliceosome
GO:0050733 IPI RS domain binding
GO:0051028 IEA mRNA transport
GO:0060048 IGI cardiac muscle contraction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258962 SRSF1-001 protein_coding Homo_sapiens 0 2163
ENST00000578430 SRSF1-007 retained_intron Homo_sapiens 0 606
ENST00000578794 RP11-159D12.5-001 protein_coding Homo_sapiens 0 544
ENST00000581497 SRSF1-009 processed_transcript Homo_sapiens 0 396
ENST00000581979 SRSF1-004 nonsense_mediated_decay Homo_sapiens 0 1166
ENST00000582730 SRSF1-003 protein_coding Homo_sapiens 0 3203
ENST00000583741 SRSF1-005 nonsense_mediated_decay Homo_sapiens 0 1781
ENST00000584668 SRSF1-008 nonsense_mediated_decay Homo_sapiens 0 728
ENST00000584773 SRSF1-002 protein_coding Homo_sapiens 0 1147
ENST00000585096 SRSF1-006 protein_coding Homo_sapiens 0 387

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