C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000180248 Rbm4-001 ENSMUSG00000094936 10090 - 19:4784293-4793901 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverMuscleENSMUST00000180248
Transcript ID Liver Muscle
ENSMUST00000180248 5.209±0.00 0.907±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YM CIL_0003YM_0006 CGP 19:4742913-4811612
CIL_0003YM CIL_0003YM_0005 CGP 19:4756543-4793901

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0002190 ISS cap-independent translational initiation
GO:0002192 ISS IRES-dependent translational initiation
GO:0003676 IEA nucleic acid binding
GO:0003723 ISS RNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005634 IDA nucleus
GO:0005654 ISS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0010494 ISS cytoplasmic stress granule
GO:0016607 ISS nuclear speck
GO:0017148 ISS negative regulation of translation
GO:0030154 IEA cell differentiation
GO:0032055 ISS negative regulation of translation in response to stress
GO:0035198 ISS miRNA binding
GO:0035278 ISS negative regulation of translation involved in gene silencing by miRNA
GO:0036002 IDA pre-mRNA binding
GO:0043153 IDA entrainment of circadian clock by photoperiod
GO:0045947 ISS negative regulation of translational initiation
GO:0046685 ISS response to arsenic-containing substance
GO:0046822 IDA regulation of nucleocytoplasmic transport
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051149 ISS positive regulation of muscle cell differentiation
GO:0051403 ISS stress-activated MAPK cascade
GO:0097157 ISS pre-mRNA intronic binding
GO:0097158 ISS pre-mRNA intronic pyrimidine-rich binding
GO:0097167 IDA circadian regulation of translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310046 RBM4B-001 protein_coding Homo_sapiens 0 1112
ENST00000310092 RBM4-001 protein_coding Homo_sapiens 0 1949
ENST00000396053 RBM4-008 protein_coding Homo_sapiens 0 593
ENST00000398692 RBM4-010 protein_coding Homo_sapiens 0 588
ENST00000408993 RBM4-002 protein_coding Homo_sapiens 0 2052
ENST00000409406 RBM4-003 protein_coding Homo_sapiens 0 1945
ENST00000412278 RBM14-RBM4-004 protein_coding Homo_sapiens 0 1369
ENST00000421355 RBM14-RBM4-003 nonsense_mediated_decay Homo_sapiens 0 1611
ENST00000483858 RBM4-007 protein_coding Homo_sapiens 0 588
ENST00000500635 RBM14-RBM4-002 protein_coding Homo_sapiens 0 344
ENST00000506523 RBM4-009 protein_coding Homo_sapiens 0 586
ENST00000510173 RBM4-014 protein_coding Homo_sapiens 0 726
ENST00000515838 RBM4-015 processed_transcript Homo_sapiens 0 501
ENST00000521717 RP11-359B20.1-001 processed_pseudogene Homo_sapiens 0 446
ENST00000522128 RP11-44N12.4-001 processed_pseudogene Homo_sapiens 0 761
ENST00000524637 RBM4B-008 protein_coding Homo_sapiens 0 643
ENST00000525754 RBM4B-002 protein_coding Homo_sapiens 0 1112
ENST00000528039 RBM4-012 processed_transcript Homo_sapiens 0 387
ENST00000530235 RBM4-013 protein_coding Homo_sapiens 0 628
ENST00000531036 RBM4B-003 protein_coding Homo_sapiens 0 643
ENST00000531969 RBM4B-004 protein_coding Homo_sapiens 0 643
ENST00000532968 RBM4-011 protein_coding Homo_sapiens 0 625
ENST00000578778 RBM4-019 protein_coding Homo_sapiens 0 586

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