C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: argonaute RISC catalytic subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000176315 Ago1-005 ENSMUSG00000041530 10090 - 4:126439503-126459207 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonOvaryENSMUST00000176315
Transcript ID Breast Colon Ovary
ENSMUST00000176315 4.172±0.00 2.432±0.00 5.954±1.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002JR CIL_0002JR_0002 CGP 4:126331704-126468583

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0003723 IDA RNA binding
GO:0005634 IDA nucleus
GO:0005737 ISO cytoplasm
GO:0005829 IDA cytosol
GO:0010586 IDA miRNA metabolic process
GO:0010628 IMP positive regulation of gene expression
GO:0035068 IDA micro-ribonucleoprotein complex
GO:0035198 IDA miRNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000156255 AGO1-001 protein_coding Danio_rerio 0 1299
ENSDART00000138318 AGO1-201 protein_coding Danio_rerio 0 1236
ENSDART00000129463 ago4-201 protein_coding Danio_rerio 0 569
ENST00000220592 AGO2-001 protein_coding Homo_sapiens 0 1033
ENST00000246314 AGO3-002 protein_coding Homo_sapiens 0 941
ENST00000373191 AGO3-003 protein_coding Homo_sapiens 0 941
ENST00000373204 AGO1-002 protein_coding Homo_sapiens 0 2396
ENST00000373206 AGO1-001 protein_coding Homo_sapiens 0 2396
ENST00000519980 AGO2-002 protein_coding Homo_sapiens 0 706
ENST00000520412 AGO2-008 retained_intron Homo_sapiens 0 436
ENST00000523609 AGO2-003 nonsense_mediated_decay Homo_sapiens 0 1033

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