C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tenascin XA (pseudogene)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173277 Tnxa-001 ENSMUSG00000092200 10090 + 17:34771395-34801623 unprocessed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungOvaryTestisENSMUST00000173277
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Ovary Testis
ENSMUST00000173277 0.085±0.01 0.018±0.00 0.035±0.00 0.079±0.02 0.039±0.03 0.029±0.01 0.026±0.01 0.035±0.01 0.080±0.05 0.040±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000424 CIL_000424_0002 CGP 17:34728380-34804561

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000375244 TNXB-001 protein_coding Homo_sapiens 0 1022
ENST00000383159 TNXB-001 protein_coding Homo_sapiens 0 1022
ENST00000383321 CYP21A2-001 protein_coding Homo_sapiens 9e-26 122
ENST00000383322 CYP21A2-002 protein_coding Homo_sapiens 1e-25 122
ENST00000404514 TNXB-006 retained_intron Homo_sapiens 0 1022
ENST00000412618 TNXB-001 protein_coding Homo_sapiens 0 1022
ENST00000418967 CYP21A2-002 protein_coding Homo_sapiens 1e-25 122
ENST00000423417 TNXA-001 unprocessed_pseudogene Homo_sapiens 0 1016
ENST00000423622 TNXA-001 unprocessed_pseudogene Homo_sapiens 0 1016
ENST00000424713 TNXB-001 protein_coding Homo_sapiens 0 1022
ENST00000424718 TNXB-001 protein_coding Homo_sapiens 0 1022
ENST00000426348 TNXB-006 retained_intron Homo_sapiens 0 1016
ENST00000434026 CYP21A2-001 protein_coding Homo_sapiens 9e-26 122
ENST00000435122 CYP21A2-001 protein_coding Homo_sapiens 9e-26 122
ENST00000436607 CYP21A2-002 protein_coding Homo_sapiens 1e-25 122
ENST00000440248 TNXB-001 protein_coding Homo_sapiens 0 1016
ENST00000448314 CYP21A2-002 protein_coding Homo_sapiens 1e-25 122
ENST00000448478 CYP21A2-002 protein_coding Homo_sapiens 1e-25 122
ENST00000448877 CYP21A2-001 protein_coding Homo_sapiens 9e-26 122
ENST00000451159 TNXB-001 protein_coding Homo_sapiens 1.4013e-45 191
ENST00000451343 TNXB-006 protein_coding Homo_sapiens 0 1022
ENST00000452386 CYP21A2-001 protein_coding Homo_sapiens 9e-26 122
ENST00000452708 CYP21A2-001 protein_coding Homo_sapiens 9e-26 122
ENST00000456152 CYP21A2-002 protein_coding Homo_sapiens 1e-25 122
ENST00000460263 CYP21A2-006 retained_intron Homo_sapiens 1e-25 122
ENST00000460385 TNXB-007 retained_intron Homo_sapiens 0 363
ENST00000460626 CYP21A2-006 retained_intron Homo_sapiens 1e-25 122
ENST00000460689 CYP21A2-004 retained_intron Homo_sapiens 1e-25 122
ENST00000464272 CYP21A2-005 retained_intron Homo_sapiens 1e-25 122
ENST00000464376 TNXB-005 processed_transcript Homo_sapiens 0 1022
ENST00000466115 TNXB-007 retained_intron Homo_sapiens 0 363
ENST00000466302 CYP21A2-005 retained_intron Homo_sapiens 1e-25 122
ENST00000467455 CYP21A2-007 retained_intron Homo_sapiens 1e-25 122
ENST00000468185 CYP21A2-005 retained_intron Homo_sapiens 1e-25 122
ENST00000468340 CYP21A2-007 retained_intron Homo_sapiens 1e-25 122
ENST00000469136 TNXB-007 retained_intron Homo_sapiens 0 363
ENST00000469250 TNXB-005 processed_transcript Homo_sapiens 0 1016
ENST00000470187 CYP21A2-006 retained_intron Homo_sapiens 1e-25 122
ENST00000471059 TNXB-005 processed_transcript Homo_sapiens 0 1022
ENST00000472130 CYP21A2-006 retained_intron Homo_sapiens 1e-25 122
ENST00000472274 TNXB-006 retained_intron Homo_sapiens 0 1022
ENST00000473538 CYP21A2-004 retained_intron Homo_sapiens 1e-25 122
ENST00000475986 TNXB-005 processed_transcript Homo_sapiens 0 1022
ENST00000477062 TNXB-006 retained_intron Homo_sapiens 0 1022
ENST00000477608 CYP21A2-007 retained_intron Homo_sapiens 1e-25 122
ENST00000479074 CYP21A2-004 retained_intron Homo_sapiens 1e-25 122
ENST00000479730 CYP21A2-006 retained_intron Homo_sapiens 1e-25 122
ENST00000486063 CYP21A2-005 retained_intron Homo_sapiens 1e-25 122
ENST00000487592 CYP21A2-004 retained_intron Homo_sapiens 1e-25 122
ENST00000488124 TNXB-006 retained_intron Homo_sapiens 0 1022
ENST00000488475 TNXB-007 retained_intron Homo_sapiens 0 363
ENST00000489006 TNXB-005 processed_transcript Homo_sapiens 0 1022
ENST00000489576 CYP21A2-004 retained_intron Homo_sapiens 1e-25 122
ENST00000490077 TNXB-005 retained_intron Homo_sapiens 0 1022
ENST00000492024 CYP21A2-006 retained_intron Homo_sapiens 1e-25 122
ENST00000493137 CYP21A2-005 retained_intron Homo_sapiens 1e-25 122
ENST00000493848 CYP21A2-007 retained_intron Homo_sapiens 1e-25 122
ENST00000494168 CYP21A2-004 retained_intron Homo_sapiens 1e-25 122
ENST00000495919 CYP21A2-007 retained_intron Homo_sapiens 1e-25 122
ENST00000496456 TNXB-007 retained_intron Homo_sapiens 0 357
ENST00000496483 CYP21A2-005 retained_intron Homo_sapiens 1e-25 122
ENST00000498094 TNXB-004 retained_intron Homo_sapiens 0 363
ENST00000507684 TNXA-001 unprocessed_pseudogene Homo_sapiens 0 1022
ENST00000515427 TNXA-001 unprocessed_pseudogene Homo_sapiens 0 1016
ENST00000546684 TNXB-208 protein_coding Homo_sapiens 0 1022
ENST00000548649 TNXB-204 protein_coding Homo_sapiens 0 1022
ENST00000549232 TNXB-207 protein_coding Homo_sapiens 0 1022
ENST00000550212 TNXB-206 protein_coding Homo_sapiens 0 1016
ENST00000550539 TNXB-205 protein_coding Homo_sapiens 0 1022
ENST00000611016 TNXB-202 protein_coding Homo_sapiens 0 1022

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